BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924899
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61320.1 | Symbols: | FBD / Leucine Rich Repeat domains con... 725 0.0
AT1G61330.1 | Symbols: | FBD, F-box and Leucine Rich Repeat do... 682 0.0
> AT1G61320.1 | Symbols: | FBD / Leucine Rich Repeat domains containing
protein | chr1:22617370-22619853 FORWARD LENGTH=1515
Length=1515
Score = 725 bits (392), Expect = 0.0
Identities = 1027/1325 (78%), Gaps = 78/1325 (6%)
Strand=Plus/Plus
Query 96 CGTTTCTTCCCATCCAATCACTTTTACAAAAC-CGTGTTG-TGTCCAAACTATTTAGAC- 152
||| ||||||| ||||||| || ||| | ||| |||| || |||||||| |||| | |
Sbjct 110 CGTATCTTCCCGTCCAATCTCTGTTA-ACAACTCGTG-TGTTGTCCAAAAGATTTCG-CG 166
Query 153 ACACAGAGATACGGTCTCTCGACCTTGATTTTAGCGAAATATTTTCT-GTAAGGCATAGT 211
| || ||| |||| ||||| ||||| ||||| || | ||||| |||| | ||| | | ||
Sbjct 167 AGACCGAGGTACGTTCTCTTGACCTCGATTTCAGTGGAATATATTCTAG-AAGACGTCGT 225
Query 212 CAACTAGAGGCTATTAACATCATCCAAAATGTCTTCAA-CAAACACGAAGGATCAGAGAT 270
|| |||| | | || ||||||| |||| || ||||| | |||| |||||||||||||
Sbjct 226 AAAGTAGAAGTTGTTGGCATCATCGAAAAAGTGTTCAATC-AACATAAAGGATCAGAGAT 284
Query 271 AAACCGATTTGTT-TTGTGTCTCAAAGATATCGGCGGGGAGGAAGCGGTAA-C--CTCAT 326
||||||| ||| | | |||||| |||| | ||| | |||| || | |||||
Sbjct 285 TCACCGATTCGTTCTACT-TCTCAATCATAT-TG-GGGTA-GAAGATAAAATCATCTCAT 340
Query 327 GGATCAAAATC-TGCATTGCCaaaaaaaTCCAA-GAGCTAGTATTGGATTTCTCCAAAAC 384
||| ||| | | || ||| |||||| || ||| ||||| || || ||||| | |||||
Sbjct 341 GGACCAATA-CATGTTTTGACAAAAACAT-CAAGGAGCTTGTCTTAGATTT-TTCAAAAT 397
Query 385 CAAGGATA-TTATGGAGA-CCGCAATCGATTTCTCGGCTATCGAAACACTTA-AAGCCTT 441
| || | | |||||| | || | || |||||||||||| | || | | || ||| ||
Sbjct 398 CTAGAAAAGTTATGGCCATCC-CCATTGATTTCTCGGCTGTGGAGAGTC-TACAAGTTTT 455
Query 442 GCATCTACGATGGTGTAAGTTTGAGATACCGGATAATTCTCCC-AAAGGCCTGAAGCTCT 500
| | || ||||||||||| ||||| ||||| |||| ||| ||| ||||| || |||||||
Sbjct 456 GAAGCTGCGATGGTGTAAATTTGAAATACCTGATAGTTC-CCCAAAAGGTCTAAAGCTCT 514
Query 501 TGAAGACTCTCTTGCTTATGCGGACTGAGGTGA-CG-AAAGAGATGATAGATGCAGTTTT 558
||||||| |||| ||||||||| || | |||| | |||| | || |||||| | ||
Sbjct 515 TGAAGACACTCTCGCTTATGCGTACCCAAGTGATGGTGAAGA-CT-ATCGATGCAATCTT 572
Query 559 CAGA-AACTGCATTAACCTTGAATCGCTTGAGCTAATTC-AATGTAGTATGCACGGGCTA 616
|| | |||||||| |||| || |||||||| |||| || |||| ||||| | ||| ||
Sbjct 573 CA-ACAACTGCATCCACCTAGAGTCGCTTGAACTAA-TCGAATGCCGTATGGATGGGATA 630
Query 617 TTGAGCATAC-TCGCTAATAACCATAAGAAGTTCAAGTCACTGGCTGTGACTTATATGCC 675
|| ||||||| | ||| | || ||||||||||||||||| || | |||| ||| ||||||
Sbjct 631 TTAAGCATACGT-GCTCAGAATCATAAGAAGTTCAAGTCGCTTGTTGTGTCTTTTATGCC 689
Query 676 AAATCTCATG-GACAT-CGTTTCGTATGCACCCACTCTT-GAATGCTTCAAGTTTGATGG 732
||||| | |||| || || | | ||||||||| || ||| || ||||| ||||||
Sbjct 690 GGATCTC-CGACACATCCGGTT-GGACGCACCCACT-TTAGAAAACTACAAGTATGATGG 746
Query 733 ATATGTCATGAATGTTATCTTTTC-AAGAACAGATTCACTTAAAGAGACAAATCTCCAAT 791
||||||||| ||||| | ||| | |||| || ||||||||||| |||||||| | |
Sbjct 747 ATATGTCATTTGTGTTAAC-ATTCTGATAACAAATGCACTTAAAGAGGCAAATCTCTACT 805
Query 792 ATAAC-AGGAGTCGCCG--TA-ACTATGATTCATCTAACATGGTGGTTGCTAACATGAAA 847
| || ||| ||| || || || | | |||| | |||||| | | || || |
Sbjct 806 A-CACTCGGATTCGGCGTTTATACCACCAAAAATCTGATTTGGTGGATAC--AC-TGCGA 861
Query 848 CACTATACAAAAGTTTA-TGTCCTGGCAACGACAAACATCTTTCTTGAGGCT-TTCACAA 905
|||||||| | ||| |||||| |||||||||| |||||||||||||||| || || |
Sbjct 862 TTCTATACAAGA-CTTACTGTCCTCGCAACGACAACCATCTTTCTTGAGGCTCTT-ACGA 919
Query 906 AGAGATACGTAGGAGGAGGAAGAATGGAAAAAAGGAGTACTTTCAAGTTTGAAAACTTAA 965
|||||||||| |||| ||||||| | | |||| | ||||||||||||| |||||||
Sbjct 920 AGAGATACGTCGGAGAAGGAAGACT--AGAAAATCCG-CCTTTCAAGTTTGAGAACTTAA 976
Query 966 GAGAATTCAAGATTTTCTTTA-AAGTTCCAACGGTTTGCACTCTTTTTGACATTGCTGAA 1024
|||||||||||||| ||||| || |||||| |||||||||| |||||||| ||||||
Sbjct 977 CAGAATTCAAGATTTCCTTTATAA-CTCCAACATTTTGCACTCTATTTGACATCGCTGAA 1035
Query 1025 TTCCTCAAAGAGTGCCCTCAACTCGAACATGTTGTGATCGATATTCAAAATTTCACATTT 1084
|||||||||||||||||| ||||| |||| ||||||||||||||||| ||||||||||||
Sbjct 1036 TTCCTCAAAGAGTGCCCTAAACTCAAACAGGTTGTGATCGATATTCAGAATTTCACATTT 1095
Query 1085 GCACCTCGATTGGAGTTTTGGGAGATTCATCATAAGGAGGAGATT----A-A----GAAG 1135
| ||||| | || | ||||||||||| |||||||||| | ||||| | | |||
Sbjct 1096 GAACCTCAAATGTATTTTTGGGAGATACATCATAAGGCGCAGATTCAGAATACTTCGAAT 1155
Query 1136 AACAACTACCTTTTGAAGTCTCTCACTGAAGTCAAGATCATTGGCTATAAAGGCCACTGG 1195
||||||||||||||||||| |||||| || || |||||||||||||||||||||||||||
Sbjct 1156 AACAACTACCTTTTGAAGTGTCTCACGGACGTGAAGATCATTGGCTATAAAGGCCACTGG 1215
Query 1196 CATGAGCTTGATATATTAGAGTTCTTTGTGAAGAACGCACCATCTCTAGTGAAGTTGGAA 1255
||||||||||||||| ||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1216 CATGAGCTTGATATAGTAGAGTTCTTTGTCAAGAACGCACCATCTCTAAAGAGGTTGGAG 1275
Query 1256 TTGGTGATGCCCAAAAACGCAAA-AACCAAAGCTCACGCACCAGAT-TATGCAAGGATAA 1313
|| |||||| || ||||| || ||| | |||||| | |||||| | |||||||||||
Sbjct 1276 TTACAGATGCCTAAGAACGCGAAGAACGAT-GCTCACACCCCAGATGT-TGCAAGGATAA 1333
Query 1314 ATTTCATAAAAAGCATATTTCCCGGGATTAAAGTTAAGGAAGTTTAAATTCATGTTGAGC 1373
| ||||||||| ||| ||| | ||| ||||||||| |||||||||| ||| |||| ||
Sbjct 1334 AGCTCATAAAAACCATCTTTTCAGGGGTTAAAGTTACCGAAGTTTAAACTCAGGTTGTGC 1393
Query 1374 CAAGC 1378
| |||
Sbjct 1394 CCAGC 1398
> AT1G61330.1 | Symbols: | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr1:22622975-22624527 FORWARD
LENGTH=1344
Length=1344
Score = 682 bits (369), Expect = 0.0
Identities = 1067/1391 (77%), Gaps = 100/1391 (7%)
Strand=Plus/Plus
Query 23 ATGTCAGAATCCTCAAACAAGCAGATAAAACTCCTTCACAATCTT-CCTGAAGAACTTGT 81
||||||||| | || || |||||||| ||||| | ||| || || |||| | | |||
Sbjct 1 ATGTCAGAAGCGTCTAATAAGCAGATGAAACT-CATCAAAAGATTGTCTGATG-AGTTG- 57
Query 82 GTTGCGGGC--CTCATCGTTTCTTCCCA-TCCAATC-ACTTTTACAAAACCGTGTTGTGT 137
|| | | || || || |||||| ||| ||||||| || ||||||| |||||||| |||
Sbjct 58 GTGGAGTGCATCTTGTCATTTCTT-CCAGTCCAATCTAC-TTTACAACACCGTGTTTTGT 115
Query 138 CCAA-ACTATTTAGACACACA-GAGATA-CGGTCTCTCGACCTTGATTTTAGCGAAATAT 194
| || | || ||| ||||| | || | | |||| |||||| ||||| |||| |||||
Sbjct 116 CGAAGA-GATATAGGGACACATG-GA-AGCTATCTCGCGACCTCGATTTCAGCGGAATAT 172
Query 195 TTTCTGTAAGGCATAGTCAACT-AGAGGCTATTA-ACATCATCCAAAATGTCTTCA-ACA 251
||||||| || | ||||||| | ||||||| || ||| ||| || | || || | |
Sbjct 173 TTTCTGTCAGACGTAGTCAA-TCAGAGGCT-GTACGCATAATCGAAGACGTTTTTATTC- 229
Query 252 AACACGAAGGATCAGAGATAAACCGATTTGTTTTGTGTCTCAAAGATATCGGCGGGGAGG 311
| ||| ||||| ||||||| |||| |||||||||| |||| | ||| ||||| |||||
Sbjct 230 AGCACCAAGGACCAGAGATCGACCGGTTTGTTTTGTCTCTCGACCATACCGGCGTGGAGG 289
Query 312 A-AGCGGTAAC-CTCATGGATCAAAATC-TG-CATTGC-CaaaaaaaTCCAAGAGCTAGT 366
| | | | || || ||| || | | | || | || | ||||| ||| ||||||| ||
Sbjct 290 ATA-AGAT-ACTTTCGTGGGTCGATA-CGTGTC-TT-CGTAAAAACATCAAAGAGCTTGT 344
Query 367 ATTGGATTTCTCCAA-AACCAAGGATATTATGGAGA-CCGCAATCGATTTCTCGGCTATC 424
|||||||||| ||| ||||| | ||||||||| || || || ||||||| | | |
Sbjct 345 GTTGGATTTCT-CAAGCTCCAAGAAGGTTATGGAGATCC-CACTCAATTTCTCATCCAGC 402
Query 425 GAAACACTTAAAGCCTTGCATCTACGATGGTGTAAG-TTTGAGATACCGGATAATTC-TC 482
|| ||||||| | ||| | || | ||||||| || ||||| |||||| |||| || ||
Sbjct 403 GAGACACTTACTGTTTTGAAGCTGCAATGGTGT-AGATTTGAAATACCGAATAA-TCTTC 460
Query 483 CCAAAGGCCTGAA-GCTCTTGAAGACTCTCTT-GCTTATGCGGACTGAGGTGACGAAAGA 540
| ||||| || || |||||||||||| || || ||| |||||||||||||| ||||| ||
Sbjct 461 CAAAAGGTCT-AAGGCTCTTGAAGACACT-TTCGCTCATGCGGACTGAGGTAACGAATGA 518
Query 541 GATGATAGATGCAGTTTTCAGA-AACTGCATTAACCTTGAATCGCTTGAGCTAATTC-AA 598
||||||||| || |||||| | |||||||| ||||||| |||||||| || | || ||
Sbjct 519 AATGATAGATTCAATTTTCA-ACAACTGCATCCACCTTGAGTCGCTTGAACT-AGTCAAA 576
Query 599 TG---TA-GTAT--GCACGGGCTATTGAGCATACT-CGCTAATAACCATAAGAAGTTCAA 651
|| | || | | | ||| || ||| |||| | |||| || | ||||||||||||||
Sbjct 577 TGCCAAATGTCTGGGAATGGGATACTGACCATA-TACGCTCATGATCATAAGAAGTTCAA 635
Query 652 GTCACTGGCT-GTGACTTATATGCCAAATCTCATGGA-CATCGTTTCGTATGCACCCACT 709
||| ||| | ||| ||| |||||||||||| | || |||| ||| | |||||||||||
Sbjct 636 GTCGTTGG-TCGTGTCTTGTATGCCAAATCT-TTTGAGCATCTTTTTGGATGCACCCACT 693
Query 710 CTTGAATGCTT-CAAGTTTGATGGATATGTCATGAATGTTATC-TTTTCAAGAACAGATT 767
|||||||| || ||||| ||||||||||| || || | | | |||| ||| | ||
Sbjct 694 CTTGAATG-TTACAAGTATGATGGATATGCCAAGACCATCAACGTTTTAAAGGTTA-ATG 751
Query 768 CACTTAAAGAGACA-AATCTCCAATATAACAGGAGTCGCCGT--AACTATG-ATTCATCT 823
||||| ||||| || ||| | | || | | ||||| || || | | |||| |||
Sbjct 752 CACTTGAAGAGGCAGAAT-TTC-AT-T---A-TAGTCGAAGTAAAAGAAGGCATTCTTCT 804
Query 824 AACATGGTGGTTGCTAACATG-AAACACTATACAAAAGTTTATGTCCTGGCAACGACAAA 882
||| |||||||| || ||| | | || | || |||| ||| ||| ||||||||||
Sbjct 805 GACACGGTGGTTGATAGTATGCTAGC-CTGTTCAGCAGTTCATGCCCTCACAACGACAAA 863
Query 883 CATCTTTCTTGAGGCTTTCACAAAGAGATACGTAGGAGGAGGAAGAATGGAAAAAAGGAG 942
|||||| |||||||| |||| | |||||| || | | |||| | ||| ||||| |
Sbjct 864 CATCTTGCTTGAGGCAATCACGTATAGATACTTA-AAAG-GGAA-ACTGG--AAAAGCCG 918
Query 943 TAC-TTTCAAGTTTGAAAACTTAAGAGAATTCAAGATTTTCTTTAAAGTTCCAACGGTTT 1001
| |||||||||||| ||||| ||||||||||||||||||||||| | |||||| |||
Sbjct 919 --CTTTTCAAGTTTGAGAACTTGAGAGAATTCAAGATTTTCTTTAAGGCTCCAACATTTT 976
Query 1002 GCACTCTTTTTGACATTGCTGAATTCCTCAAAGAGTGCCCTCAACTCGAACATG-TTGTG 1060
||||||| ||||| || ||||||||||| |||||||||||| |||||||||| | || |
Sbjct 977 GCACTCTCTTTGATATCGCTGAATTCCTTAAAGAGTGCCCTAAACTCGAACA-GTTTATC 1035
Query 1061 ATCGATATTCAAAATTTCACATTTGCACCTCGATTGGAGTTTTGGGAGATTCATCATAAG 1120
|| |||||||| ||||||||||||| ||||| | || | ||||||||||| |||||||||
Sbjct 1036 ATTGATATTCAGAATTTCACATTTGAACCTCAAATGTATTTTTGGGAGATACATCATAAG 1095
Query 1121 GAGGAGATT----A-A----GAAGAACAACTACCTTTTGAAGTCTCTCACTGAAGTCAAG 1171
| | ||||| | | ||| ||||||||||||||||||| |||||| || || |||
Sbjct 1096 GCGCAGATTCAGAATACTTCGAATAACAACTACCTTTTGAAGTGTCTCACGGACGTGAAG 1155
Query 1172 ATCATTGGCTATAAAGGCCACTGGCATGAGCTTGATATATTAGAGTTCTTTGTGAAGAAC 1231
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1156 ATCATTGGCTATAAAGGCCACTGGCATGAGCTTGATATAGTAGAGTTCTTTGTCAAGAAC 1215
Query 1232 GCACCATCTCTAGTGAAGTTGGAATTGGTGATGCCCAAAAACGCAAA-AACCAAAGCTCA 1290
|||||||||||| || |||||| || |||||| || ||||| || ||| | |||||
Sbjct 1216 GCACCATCTCTAAAGAGGTTGGAGTTACAGATGCCTAAGAACGCGAAGAACGAT-GCTCA 1274
Query 1291 CGCACCAGAT-TATGCAAGGATAAATTTCATAAAAAGCATATTTCCCGGGATTAAAGTTA 1349
| | |||||| | |||||||||||| ||||||||| ||||||| | ||| |||||||||
Sbjct 1275 CACCCCAGATGT-TGCAAGGATAAAGCTCATAAAAACCATATTTTCAGGGGTTAAAGTTA 1333
Query 1350 AGGAAGTTTAA 1360
|||||||||
Sbjct 1334 CCGAAGTTTAA 1344
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5