BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924910
Length=1471
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61215.1 | Symbols: BRD4 | bromodomain 4 | chr1:22572645-225... 2307 0.0
> AT1G61215.1 | Symbols: BRD4 | bromodomain 4 | chr1:22572645-22575527
FORWARD LENGTH=2109
Length=2109
Score = 2307 bits (1249), Expect = 0.0
Identities = 1405/1479 (95%), Gaps = 16/1479 (1%)
Strand=Plus/Plus
Query 1 CACGCGTGATTTA-T-TTTTTGATGGTTATGGTGATGATAACGACGACGATGGAGAGTGA 58
||||||||| ||| | ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 508 CACGCGTGA-TTATTATTTTTGATGGTTATGGTGATGATGACGACGACAATGGAGAGTGA 566
Query 59 TTGGGGAACATGGGAGGAGCTTCTTCTCGGCGGCGCTGTTCTCCGTCATGGAACCGGTGA 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 TTGGGGAACATGGGAGGAGCTTCTTCTCGGCGGCGCTGTTCTCCGTCATGGAACCGGTGA 626
Query 119 CTGGACCGTCGTCGCTGAGGAACTCCGTTCTCATTCTCTACCTGAGATTTTCACACCTGA 178
||||||||||| || || |||||||||||||||||| ||||||||||||||||||||||
Sbjct 627 TTGGACCGTCGTTGCCGACGAACTCCGTTCTCATTCTTTACCTGAGATTTTCACACCTGA 686
Query 179 GATATGCAAGGCCAAGTACAAGGACTTGCGAAAACGTTATTTGGGATGCAAAGCTTGGTT 238
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 687 GATATGCAAGGCCAAGTACAAAGACTTGCGAAAACGTTATGTGGGATGCAAAGCTTGGTT 746
Query 239 TGAAGAGCTTAAGAAGAAACGAGTAGCTGAGCTTAAGGCAGCTTTACTTAAATCCGATGA 298
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 747 TGAAGAGCTTAAGAAGAAACGAGTAGCTGAGCTTAAAGCAGCTTTACTTAAATCCGAAGA 806
Query 299 CTCGATTGGGTCTTTGGAATCAAAGCTTCAGAGTCTGAAGTCAGAAAGTAACGATGAATG 358
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 807 CTCTATTGGGTCTTTGGAATCAAAGCTTCAGAGTCTGAAGTCAGAAAGTAATGATGAATG 866
Query 359 TCATCAAAACAATTATGATTCTAGCCGAACGTTATCACTTGAACCCTCCCCGAAATCCGA 418
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 867 TCATCAAAACAATTATGATTCTAGCCGAACGTTATCACTCGAACCCTCCCCAAAATCCGA 926
Query 419 GGGCGGAGGAGAATGCACGAGCAAAGATACATCCAAAGACTTGTCATCAGTTGGTAGTTT 478
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 GGGCGGGGGAGAATGCACGAGCAAAGATACATCCAAAGACTTGTCATCAGTTGGTAGTTT 986
Query 479 CACACAGCAAGAGCTGACCATAACAAACTGGTCACCGGAAGCTAAGTCAGAAGCTCCAGT 538
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 987 CACACAGCAAGAGCTGACCACAACAAACTGGTCACCGGAAGCTAAGTCAGAAGCTCCAGT 1046
Query 539 AGTAATAGAGCAAGAGAAGACGAAAAACCTATTACACAGCGACATTTTTGAGTCAGTGTA 598
|||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 1047 GGTAATAGAGCAAGAGAAGACGAAAGACCTATTACACAACGACATTTTCGAGTCAGTGTA 1106
Query 599 TGGGGGTGGAGGACAAGTGCTTCTGAGTATGAGGAAGAAACGAGGCAAGAGAAAACGGAA 658
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1107 CGGAGGTGGAGGACAAGTGCTTCCGAGTATGAGGAAGAAACGAGGCAAGAGAAAACGAAA 1166
Query 659 AGATTGCAGTGTCAGTGTTGGTAAAGAAGTGATGGAAGTTAGCGCTGTGGAAGAAAGCGA 718
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 AGATTGCAGTGTCAGTGTCGGTAAAGAAGTGATGGAAGTTAGCGCTGTGGAAGAAAGCGA 1226
Query 719 TTTGTTGGATACTTCTGCGGATATTGCTAGCATTTCTAGGAGTAAAGAAGCTGCTTCTAC 778
|||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1227 TTTGTTTGATACATCTGCGGATATTGCTAGCATTTATAGGAGTAAAGAAGCTGCTTCTAC 1286
Query 779 TAGCAGCAGTCAAAGCCGAGGTCATGGTTTGGCTATACC-AAAGGAGCTTATGAAGATAT 837
|||||||||||||||||||||||| |||||||| |||| |||| |||||||||||||||
Sbjct 1287 TAGCAGCAGTCAAAGCCGAGGTCACAGTTTGGCTTTACCCAAAG-AGCTTATGAAGATAT 1345
Query 838 ACAACACTATCGTACAGAACGAATGTGCACTCGTCTTCCGTAGACGGCTTGATAGCCAGA 897
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 ACAACACTATTGCACAGAACGAATGTGCACTCGTCTTCCGTAGACGGCTTGATAGCCAGA 1405
Query 898 AAAGGGGGAGATACAAGAAATTGGTACAGAGGCATATGGATTTAGACACTATACAATCAA 957
|||| || |||||||||||||| |||| |||||||||||||||||||||| |||||||||
Sbjct 1406 AAAGAGGAAGATACAAGAAATTAGTACGGAGGCATATGGATTTAGACACTGTACAATCAA 1465
Query 958 GAATCAACGGTTGTTCGATATCTTCAGCGAAAGAGCTTTTTAGGGACTTTCTTTTGGTGG 1017
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1466 GAATCAACGGTTGTTCGATATCTTCGGCGAAAGAGCTTTTTAGGGACTTTCTTTTGGTGG 1525
Query 1018 CGAACAATGCAGCTATTTTTTACTCTAAGAACACTCGTGAATACAAATCCGCGGTGAGCC 1077
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 1526 CGAACAATGCAGCTATTTTTTACTCTAAGAACACTCGAGAATACAAATCCGCGGTGGGAC 1585
Query 1078 TTAGAGACATTGTTACAAAGTCTCTAAGACACTATTTGACAGAAGATCATCATCCTCATC 1137
|||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1586 TTAGAGACATTGTTACCAAGTCTCTAAGACACTATTTAACAGAAGATCATCCTCCTCATC 1645
Query 1138 GCAGCAGCATTACTGC---AAGCACAAAGGTTGTGGTTCTTCCTCAGAAATCTACTTCTC 1194
|||||||||||||||| ||||||||||||||||||||||| ||||||||| || ||||
Sbjct 1646 GCAGCAGCATTACTGCTGGAAGCACAAAGGTTGTGGTTCTTCATCAGAAATCGACATCTC 1705
Query 1195 CTTCTGTCAGAACGAGCCTGGGAGCTAAAAAACCAAGAACCGGGGCGCACCCTCTTAAAA 1254
|||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1706 CTTCTGTCCGAACGAGTCTGGCAGCTAAAAAACCAAGAACCGGGGCGCACCCTCTTAAAA 1765
Query 1255 CGGTTGTGCATGATATGGCAAAGACTTCAAGCAGGGGTAACAAAAGGTCTGTTACGGATT 1314
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1766 CGGTTGTGCAAGATATGGCAAAGACTTCAAGTAGGGGTAACAAAAGGTCTGTTACGGATT 1825
Query 1315 TACCAGTTTCTGCTGTGAAATCCTCAGCAGCGGGTAAGAAGGGAACAGCGGTAGAGAGAA 1374
||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||
Sbjct 1826 TACCAGTTTCTGCTGTGAAATCCTCGGCAGCGGGTAAGAAGGGAACTGCGGTA-AGA-AA 1883
Query 1375 GAAAGGACGGTAGACAAGCAAATCGTGGACTCGAATCTCCTGCATTGATGGGGAGAAAGC 1434
| | ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1884 -A--G-ACGGTAGACAAGCGAATCGCGGACTCGAATCTCCTGCATTGATGGGGAGAAAGC 1939
Query 1435 GGAACCGGGTTAGATGATTTTT--ATGAAGGGTTTGTTT 1471
|||||||||||||||||||||| |||||||||||||||
Sbjct 1940 GGAACCGGGTTAGATGATTTTTGTATGAAGGGTTTGTTT 1978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72539787525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5