BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924912
Length=325
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61310.1 | Symbols: | LRR and NB-ARC domains-containing dis... 257 4e-68
AT1G61180.2 | Symbols: | LRR and NB-ARC domains-containing dis... 246 8e-65
AT1G61300.1 | Symbols: | LRR and NB-ARC domains-containing dis... 246 8e-65
> AT1G61310.1 | Symbols: | LRR and NB-ARC domains-containing disease
resistance protein | chr1:22613063-22615943 REVERSE LENGTH=2881
Length=2881
Score = 257 bits (139), Expect = 4e-68
Identities = 239/283 (84%), Gaps = 24/283 (8%)
Strand=Plus/Plus
Query 18 AGCATGAAGGATCTGACTTGGCTATTGTTTGCTCCAAATCTTGT-GTCCCTA--CAATTT 74
||||||||||||||||||||| |||||||||||||||||||||| || ||| | | ||
Sbjct 2281 AGCATGAAGGATCTGACTTGGATATTGTTTGCTCCAAATCTTGTCGT-GCTATTC-A-TT 2337
Query 75 CAATATTC-AGATGAAGTGGAAGAAATTATAAACAAAGAGAAAGCAACCAATCTTACA-G 132
|| |||| ||| ||||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 2338 GAAGATTCAAGA-GAAGTGGGAGAAATAATAAACAAAGAGAAAGCAACCAATCTTACAAG 2396
Query 133 CTATTTCACCATTTCAGAAACTAGAAAGCTT-ATATTTG-GTTTATTTGCCTAAGCTGGA 190
|||| ||||||||| |||||||||||| || || |||| ||| ||||||| ||||||||
Sbjct 2397 -TATTACACCATTTCTGAAACTAGAAAGGTTGAT-TTTGTGTT-ATTTGCCGAAGCTGGA 2453
Query 191 GAGTATCTACAAGAGTCCTCTTCCCTTTCCA-TTATTGAAGCACATA-ACTGCAT-ATCG 247
|||||||||| ||||||||| |||||||| || ||| | ||||| | || | | |
Sbjct 2454 GAGTATCTACTGGAGTCCTCTCCCCTTTCCGCTT-TTGTTGAACATAGA-TGT-TGAA-G 2509
Query 248 C-TGTCCAAAGCTGAGAAAGCTTCCCAT-AAATGCTACAAGTG 288
||||||||||||||||||||||| || ||||||||||||||
Sbjct 2510 AATGTCCAAAGCTGAGAAAGCTTCC-ATTAAATGCTACAAGTG 2551
> AT1G61180.2 | Symbols: | LRR and NB-ARC domains-containing disease
resistance protein | chr1:22551345-22554649 FORWARD LENGTH=3305
Length=3305
Score = 246 bits (133), Expect = 8e-65
Identities = 239/286 (84%), Gaps = 23/286 (8%)
Strand=Plus/Plus
Query 18 AGCATGAAGGATCTGACTTGGCTATTGTTTGCTCCAAATCTTGT-GTCCCTACA-ATTTC 75
||||||||||||||||||||| |||||||||||||||||||||| || | ||| |||
Sbjct 2383 AGCATGAAGGATCTGACTTGGATATTGTTTGCTCCAAATCTTGTCGTGC-TACTCATTG- 2440
Query 76 AATATTCA-GATGAAGTGGAAGAAATTATAAACAAAGAGAAAGCAACCAATCTTACA-GC 133
|| ||||| || ||||||| |||||| |||||||||||||||||||||||||||||| |
Sbjct 2441 AAGATTCAAGA-GAAGTGGGAGAAATAATAAACAAAGAGAAAGCAACCAATCTTACAAG- 2498
Query 134 TATTTCACCATTTCAGAAACTAGAAAGCTT-ATATTTGGTTTA-TTTGCCTAAGCTGGAG 191
|||| ||||||||| |||||||||| | || || |||| | || |||||| |||||||||
Sbjct 2499 TATTACACCATTTCTGAAACTAGAATGGTTGAT-TTTG-TATAATTTGCCGAAGCTGGAG 2556
Query 192 AGTATCTACAAGAGTCCTCTTCCCTTTCCA-TTATTGAAGCAC-ATA-ACTGCAT-ATCG 247
||||||||| ||||||||| |||||||| || ||| | || || | || | |
Sbjct 2557 AGTATCTACTGGAGTCCTCTCCCCTTTCCGGTT-TTGTTG-ACCATGGA-TGTTTCAAA- 2612
Query 248 CTGTCCAAAGCTGAGAAAGCTTCCCAT-AAATGCTACAAGTGATTT 292
|||||||||||||||||||||||| || |||||||||||||| |||
Sbjct 2613 CTGTCCAAAGCTGAGAAAGCTTCC-ATTAAATGCTACAAGTG-TTT 2656
> AT1G61300.1 | Symbols: | LRR and NB-ARC domains-containing disease
resistance protein | chr1:22607466-22610273 REVERSE LENGTH=2635
Length=2635
Score = 246 bits (133), Expect = 8e-65
Identities = 235/281 (84%), Gaps = 20/281 (7%)
Strand=Plus/Plus
Query 18 AGCATGAAGGATCTGACTTGGCTATTGTTTGCTCCAAATCTTGTGTCCCTACA-ATTTCA 76
||||| ||||||||||||||| |||||||||||||||||||||| | |||| | ||| |
Sbjct 2004 AGCATAAAGGATCTGACTTGGATATTGTTTGCTCCAAATCTTGTCTACCTATACATTG-A 2062
Query 77 ATATTCA-GATGAAGTGGAAGAAATTATAAACAAAGAGAAAGCAACCAATCTTACA-GCT 134
| ||||| || ||||||| |||||| |||||||||||||||||||||||||||||| | |
Sbjct 2063 AGATTCAAGA-GAAGTGGGAGAAATAATAAACAAAGAGAAAGCAACCAATCTTACAAG-T 2120
Query 135 ATTTCACCATTTCAGAAACTAGAAAGCTT-ATATTTGGTTTA-TTTGCCTAAGCTGGAGA 192
||| ||||||||| |||||||||||| || || |||| | || |||||| ||||||||||
Sbjct 2121 ATTACACCATTTCTGAAACTAGAAAGGTTGAT-TTTG-TATAATTTGCCGAAGCTGGAGA 2178
Query 193 GTATCTACAAGAGTCCTCTTCC-CTTTCCA--TTA-TTGAAGCACATAACTGCATATCGC 248
|||||||| ||||||||| || ||||||| || || || | | | | | || |
Sbjct 2179 GTATCTACTGGAGTCCTCT-CCACTTTCCACGTTTGTT-AATTATACATGTTC-TAGA-C 2234
Query 249 TGTCCAAAGCTGAGAAAGCTTCCCAT-AAATGCTACAAGTG 288
||||||||||||||||||||||| || ||||||||||||||
Sbjct 2235 TGTCCAAAGCTGAGAAAGCTTCC-ATTAAATGCTACAAGTG 2274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15130592449
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5