BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924918
Length=521
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 492 2e-138
AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 348 4e-95
> AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065
REVERSE LENGTH=1193
Length=1193
Score = 492 bits (266), Expect = 2e-138
Identities = 358/401 (89%), Gaps = 12/401 (3%)
Strand=Plus/Plus
Query 101 AAATTACAAGACAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCTCTGGT 160
||||||||||||||||| ||||||||||| |||| ||||||||||| | ||||||
Sbjct 466 AAATTACAAGACAACATTCTCTCAATCGAATGTCCTGTCTCTGGTT------GTTCTGGT 519
Query 161 CGGCTCGAGCCTGATAAGTGTCGTCAAATCTTGGCC-AGAGAGGTTTTTGATCAGCGGGG 219
||||||||||| ||| |||||||||| || || ||| | |||||||||||||| | ||||
Sbjct 520 CGGCTCGAGCCAGATCAGTGTCGTCAGAT-TTTGCCTAAAGAGGTTTTTGATCGGTGGGG 578
Query 220 TGATGCTCTT-TCTGAAGCAGTATTGATTCGTTCAAAGAGATTTTACTGTCCTTATAAGG 278
||||||| || | |||||||||| |||| ||||| |||| ||| ||||||||||| ||||
Sbjct 579 TGATGCT-TTGTGTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGG 637
Query 279 ATTGCTCTGCTTTGCTTTTCATT-GACGAGAGTGAAGTGAAGATGAAAGATTCGGAGTGT 337
|||||||||||||| ||||| || || ||||||||||| |||||||||||||||||||||
Sbjct 638 ATTGCTCTGCTTTGGTTTTC-TTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGT 696
Query 338 CCTCATTGCCATATAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCAGAGATAACT 397
|||||||| |||| |||||||||||| |||||||||||| |||||||||| ||||| |||
Sbjct 697 CCTCATTGTCATAGAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACT 756
Query 398 TGCGAGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTCGCG 457
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||
Sbjct 757 TGCGAGGAGTTTCAGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCG 816
Query 458 ACGATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 498
|||||||||||| ||||||||||||||||||||||||||||
Sbjct 817 ACGATGGCAAAGCAAAAGAAATGGAAAAGATGTCCTTCTTG 857
> AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518:
Zinc finger, C3HC4 type (RING finger), signature
and Pfam:PF01485 IBR domain; blastp match of 25% identity
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse) {Mus musculus}
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231
Score = 348 bits (188), Expect = 4e-95
Identities = 342/413 (83%), Gaps = 23/413 (6%)
Strand=Plus/Plus
Query 96 CTGCAAAATTACAAGACAACATCCTCTCAATCGAGTGTCTTGTCTCTGGTTGCGAGAGCT 155
|||| || |||||||||||||| ||||||||| | || | ||| ||||||| |||
Sbjct 560 CTGCTAAGTTACAAGACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTT------GCT 613
Query 156 CTGGTCGGCTCGAGCCTGATAAGTGTC-GTCAAATCTTGGCC-AGAGAGGTTTTTGATCA 213
| || | ||||||||| ||||| || | |||||||| | ||| ||||| || |||||||
Sbjct 614 CGGGGCAGCTCGAGCCCGATAAATG-CGGTCAAATCCT-GCCAAGAGAAGTCTTTGATCG 671
Query 214 GCGGGGTGATGCTCTTT-CTGAAGCAGT-ATTGATTCGTTCAAAGAGATTTTACTGTCCT 271
| |||| || ||||||| | || || || ||| || ||||||||||||| || ||||||
Sbjct 672 GTGGGGAGACGCTCTTTGC-GAGGCGGTGATT-ATGAGTTCAAAGAGATTCTATTGTCCT 729
Query 272 TATAAGGATTGCTCTGCTTTGCTTTTCATTG-ACGAGAGTGAAGT-GA-A-GATGAAAG- 326
||||||||||||||||||||||| ||| ||| |||||||||||| || | |||||| |
Sbjct 730 TATAAGGATTGCTCTGCTTTGCTCTTC-TTGGACGAGAGTGAAGAAGAGAAGATGAATGT 788
Query 327 ATTCGGAGTGTCCTCATTGCCATATAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATC 386
|| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 789 AT-CGGAGTGTCCTCATTGCCATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATC 847
Query 387 CAGAGATAACTTGCGAGGAGTTTCAGAAGCTAGCGGAGAACGAAAGAGGAAGAGATGATA 446
| |||||||| |||||||||||||| |||||||| ||||||||||||| ||||| ||||
Sbjct 848 CGGAGATAACATGCGAGGAGTTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATA 907
Query 447 TTTTGCTCGC-GACGATGGCAAAGAAAAAGAAATGGAAAAGATGTCCTTCTTG 498
| ||| | | || |||||| ||| ||||| |||| |||||||||||||||
Sbjct 908 TATTGTT-GAAGAATATGGCAGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTG 959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24916136912
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5