BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924923
Length=2677
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61120.1 | Symbols: TPS04, GES, TPS4 | terpene synthase 04 |... 3989 0.0
> AT1G61120.1 | Symbols: TPS04, GES, TPS4 | terpene synthase 04
| chr1:22523637-22528811 FORWARD LENGTH=2899
Length=2899
Score = 3989 bits (2160), Expect = 0.0
Identities = 2506/2674 (94%), Gaps = 19/2674 (1%)
Strand=Plus/Plus
Query 10 TTAGAAAAACAATGAAGTCCTCTTACGCTTCTTCCTCTGATGATCTCCACGCTTTGGTCA 69
||| ||||||||||||||| ||||||| |||||||||| |||||||||||||||| ||||
Sbjct 42 TTATAAAAACAATGAAGTCTTCTTACGGTTCTTCCTCTAATGATCTCCACGCTTTTGTCA 101
Query 70 ATGAGATCAAGAGAGAAATTCAGTTGTCCAACATTAATCTTGATCCTTACTCATTTGTCT 129
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 ATGAGATCAAGGGAGAAATTCAGTTGTCCAACATTAATCTTGATCCTTACTCATTTGTCT 161
Query 130 CTCCTTCAGCTTACGACACGGCTTGGTTATCCATGATCGAAGAAGAAAACAACGTAGGTG 189
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 162 CTCCTTCCGCTTACGACACGGCTTGGTTATCCATGATCGAAGAAGACATCAACGTAGATG 221
Query 190 ATGATGAGCTTAAACCGATGTTCCAAGATTGTCTAGATTGGATTATGTGCAATCAAAATG 249
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 222 ATAATGAGCTTAAACCGATGTTCCAAGGTTGTCTAGATTGGATTATGTGCAATCAAAATG 281
Query 250 CCAGAGAAGGTTTCTGG-GGAAACTCCGGAAGTTATACTACGGTGGCTGATGCCGGAGAT 308
||||||||||||||||| | |||||| |||||||| ||||||||||||| | ||||
Sbjct 282 CCAGAGAAGGTTTCTGGATG-AACTCCACCAGTTATACAACGGTGGCTGATGGCAGAGAC 340
Query 309 GAAGGCGGCGAAGAGGACATGTATATTCTCAGTTCCACTCTTGCTTGTGTTGTAGCACTT 368
|||| ||||||| ||||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 341 GAAGACGGCGAAAAGGACATGTGTATTCTAACTTCCACTCTTGCTTGTGTTGTAGCACTT 400
Query 369 CAGAAGTGGAACACTGGGTGTTTTCATCTCCACAAAGGGACGAGATATATCGAAAGAAAT 428
||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 CAGAAATGGAATATTGGGTGTTTTCATCTCCACAAAGGGACGAGATATATCGAAAGAAAT 460
Query 429 ACGGAAATGATAATTGGAAAATACATCAACGAAGAAGGATCTTATCCTCGTTGGTTCGTT 488
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 461 ACGGAGATGATAATTGGGAAATACATCAACGAAGAAGGATCTTATCCTCGTTGGTTCGCT 520
Query 489 ATCAAATTCACAGGAATCCTAGAGCTTGCTCAACAACTTGGCTTACATTTTGTCTTCTCT 548
||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct 521 ATCAAATTCACAGGAATCCTAGAGCTTGCTCAAAAACTTGGCTTACACTTTGTTTTCTCT 580
Query 549 AGTCGCTGCATCGATATGATCAAAGGGATGTTTTATCAACGCCAAGAGATTATCAAAAGA 608
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 581 AGTCGCTGTATCGAAATGATCAAAGGGATGTTTTATCAACGCCAAGAGATTATCCAAAGA 640
Query 609 GAAAAATTGGTGGATGATTGTAACTACAAACCTCTGTTGGCCTATCTAGAGGTGTTACCA 668
||||||||||| |||| ||||| || |||||| | ||||||||||||||||||| |||
Sbjct 641 GAAAAATTGGTACATGACTGTAATTATAAACCTTTACTGGCCTATCTAGAGGTGTTGCCA 700
Query 669 TGGAAATTATATGTCAAAAATAAAGAAGACATCATCGTTAAGAGTCTCGACAGTATCGAT 728
| |||||||||||||| |||| ||||||||||||| || ||||||||||||||||| |||
Sbjct 701 TCGAAATTATATGTCACAAATCAAGAAGACATCATTGTGAAGAGTCTCGACAGTATGGAT 760
Query 729 GGCTCGTTATTTCAGTCACCTTCAGCAACTGCGTCAGCGTTTATGCTCACTCGCAACACA 788
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 761 GGCTCTTTGTTTCAGTCACCTTCAGCAACTGCATCAGCGTTTATGCTCACTCGCAACACA 820
Query 789 AAATGTCTAGCTTATCTTCAAAATCTCGTTCAAAAATGCCCTAATGGAGTGCCACAAAAG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 AAATGTCTAGCTTATCTTCAAAATCTCGTTCAAAAATGCCCTAATGGAGTGCCACAAAAG 880
Query 849 TACCCTCTCAATGAAGATCTCATAAAACTCTCCATGGTTAATCTAATCGAGAGTACTGGT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 TACCCTCTCAATGAAGATCTCATAAAACTCTCCATGGTTAATCTAATCGAGAGTACTGGT 940
Query 909 TTAGGAGAGTTCTTCGGTATAGAGATTGAACACGTTCTTGAACAAGTTTACAGGCACTAT 968
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| | |||
Sbjct 941 TTAGGAGAGTTCTTTGGTATAGAGATTGAACACGTTCTGGAACAAGTTTACAGCCGCTAC 1000
Query 969 GAGGAAAAAGATGTCGAGAGAATGTCCATGAGTTATCTAGCTGATCAATTGCACAAAGAC 1028
|| ||||||||| | ||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 1001 GAAGAAAAAGATTTTGAGAGAATGCCCATGAGTTATCTGGCGGATCAATTGCACAAAGAC 1060
Query 1029 TCTCTTGCATTTCGGATGTTAAGAATGCATGGTCGAGACGTTTCACCTAGAAGCTTTTGT 1088
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1061 TCTCTTGCATTTCGAATGTTAAGAATGCATGGTCGGGATGTTTCACCTAGAAGCTTTTGC 1120
Query 1089 TGGTTCTTGAATGATCAAGAAA-TGCGATATCAGTTAGAAAGAAACATAGACTCTTTCTT 1147
|||||||||||||||||||||| | ||| |||| ||||||||||| ||||||||||||||
Sbjct 1121 TGGTTCTTGAATGATCAAGAAACT-CGAAATCATTTAGAAAGAAATATAGACTCTTTCTT 1179
Query 1148 GCTTGTGATCCTAAATGTTTACAGAGCCACGGATCTCATGTTTCCGGGAGAGCATGATCT 1207
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 GCTTGTGATCCTAAGTGTTTACAGAGCCACGGATCTCATGTTTCCGGGAGAGCATGATCT 1239
Query 1208 TGAAGAAGCAAGAGAATATACTCGGAATTTACTCAAGAAAAGTCGGTCCATTAATGAAAA 1267
| |||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||
Sbjct 1240 TCAAGAAGCAAGAGAATATACTCGGAATTTACTCGAGAAACGTCGGTCCATCAAAGAAAA 1299
Query 1268 AATGATTGTGCATGAATTAAGTACTCCATGGATAGCTCGACTCAAACACCTTGATCATAG 1327
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1300 AATGATTATGCATGAATTAAGTACTCCATGGATAGCTCGACTCAAACACCTTGACCATAG 1359
Query 1328 GATGTGGATTGAGGACAAGAACTCAAATGCCCTCTC-AGTCGGAAAA-GCCTCTTTTCTA 1385
||||||||||||||||||||||||||||| | || | | |||||| ||||||||||||
Sbjct 1360 GATGTGGATTGAGGACAAGAACTCAAATGTTTTATCCA-T-GGAAAAAGCCTCTTTTCTA 1417
Query 1386 AGACTAAACAATGCGTATAGCAACAAACTGACTCATCTTGCCGCAA-AAACCTTCGAGTT 1444
|||||| | | | |||||||| ||||||||||||||||||| |||| |||| ||||||||
Sbjct 1418 AGACTACATAGTTCGTATAGCGACAAACTGACTCATCTTGCTGCAAGAAAC-TTCGAGTT 1476
Query 1445 TCGACAAGCCAAATATTGTCGCGAGCTGGAGGAATTGACAATGTGGGTAAAGAAATGGGG 1504
|| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1477 TCAACAAGCCAAATACTGTCGCGAGCTGGAGGAACTGACAATGTGGGTAAAGAAATGGGG 1536
Query 1505 ACTTAGTGATATTGGTTTTGGTAGAGAGAAGACAACATATAGTTACTTTGCAACTGTGAC 1564
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1537 ACTTAGTGATATTGGTTTCGGTAGAGAGAAGACAACATATTGTTACTTTGCAACTGTGAC 1596
Query 1565 TTCGTTGCCCTATGAATATGCCATTAAATTTGGTAAGCTTGCAGCAAAAAGTGCCATCCT 1624
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 1597 TTCGTTGCCCTATGAATATGCCATTAAATTTGGTAAGCTTGCAGCAAAAACTGCTATCCT 1656
Query 1625 CATCACAATTGCCGATGATTTCTTTGATGAAGTAGGTTCTTTCAATGACCTGGAAGCTCT 1684
|||||||||||||||||| ||||| |||||| |||||| ||||||||| |||||| |||
Sbjct 1657 CATCACAATTGCCGATGACTTCTTCGATGAAAAAGGTTCCTTCAATGACTTGGAAGGTCT 1716
Query 1685 TACTAAAGCAGTTTTAAGATGGGAAGGAGAAGAGCTTAAAGGTTACGGCAAGATCATTTT 1744
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1717 TACTAAAGCAGTTTTAAGATGGGAAGGAGAAGAGCTTAAAAGTTACGGCAATATCATTTT 1776
Query 1745 CAGAGCACTTGATGATATTGTAAGAGAGACTGCAAATACTTGTCGTACGCACCACAAAAC 1804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TAGAGCACTTGATGATATTGTAAGAGAGACTGCAAATACTTGTCGTACGCACCACAAAAC 1836
Query 1805 CGACATAATCGTCCATCTTCGCAACATCTGGGGTGAAACATTTGAGTCGTGGCTGCGTGA 1864
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1837 CGACATAATTGTCCATCTTCGCAACATCTGGGGTGAAACATTTGAGTCGTGGCTACGTGA 1896
Query 1865 AGCTGAATGGAGTAAGAAGGGACACACAGT-GTCGATGGAAGAATATATTCGAAACGGAA 1923
||||||||||||||| |||||||||||| | ||| ||||| |||||||||||||||||||
Sbjct 1897 AGCTGAATGGAGTAAAAAGGGACACACA-TCGTCAATGGACGAATATATTCGAAACGGAA 1955
Query 1924 TGATCTCAATCGCAGCACACACCATTGCTCTTTCCATCTCATGTCTCATGGAACCTTGTT 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1956 TGATCTCAATCGCAGCACACACCATTGCTCTTTCCATCTCATGTCTCATGGAACCTTGTT 2015
Query 1984 TTCCCCAAAACAAACTCAAACAGGGAAATTACGATAACATAACTACATTGCTCATGATCA 2043
||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 2016 TTCCCCACAACAAACTCAAACCGGGAAATTACGATAGCATAACTACATTGCTCATGATCA 2075
Query 2044 TATCTCGACTCTTAAATGATCTACAAAGTTATCAGAAGGAACAAGAACAAGGGAAGATCA 2103
|| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2076 TACCTCGACTTTTAAATGACCTACAAAGTTATCAGAAGGAACAAGAACAAGGGAAGATGA 2135
Query 2104 ACTCCGTGCTGCTCCACTTGAAGAATCATCCAGGTCTCGAGATTGAGGACTCGATAGCTC 2163
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 2136 ACTCCGTGCTGCTCCACATGAAGAATCATCCAGGTCTGGAGATTGAGGACTCGATCGCTC 2195
Query 2164 ATATTGAAAAGATAATCGATTCAAAAAGAAAAGAGTTTATGGAGCATGTACTAGTTGATG 2223
|||| |||||||| |||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 2196 ATATCGAAAAGATTATCGATTCAAAAAGGAAAGAGTTTCTGGAGCATGTACTAGTTGATG 2255
Query 2224 GAAAAAGTGACTTGCCGAAACCGTGCAAAGAGATTCACATGTCTTGTTGTAAAGTCTTCG 2283
|| ||| || ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2256 GACTAAGCGATTTGCCAAAACCGTGCAAGGAGATTCACATGTCTTGTTGTAAAGTCTTCG 2315
Query 2284 AGATGTTTTTTAACAAGAAGAACCGTTATGATTCGAACACGGAGATGCTTCAAGACATTA 2343
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 2316 AGATGTTTTTTAACAAGAAGAACCGTTATGATTCAAACACGGAGATGCTTCATGACATTA 2375
Query 2344 AGAAGGCTCTCTATGATCCCGTGAATGTTTATGAACTATCAGAGATCGAGCCTATGCCAC 2403
|||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 2376 AGAAGGCTCTCTATGATCCCATCAATGTTTATGAACTATCAGAGATGGAGCCTATGCCAC 2435
Query 2404 TGATGACACATGGTGATGACAT-TATGATTCTTCCTTTGCTTTTGAACAGTTTGGCGCCA 2462
||||| ||||||||||||| || ||||||||||||||||||||||||||||||| | | |
Sbjct 2436 TGATGGCACATGGTGATGA-ATATATGATTCTTCCTTTGCTTTTGAACAGTTTG-C-C-A 2491
Query 2463 AATATTCTTGAATTTAAGAGGAAGGACGAATACGGAGCAATGAAAACATCTATGTGCTTG 2522
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2492 AATATTCTTGAATTTAAGAGGAAGGACGGATACGGAGCAATGAAAACATCTATGTGCTTT 2551
Query 2523 GGAAGAACTTATAGTGTTCATAAACGCGTTATGGCCTCACAGCTTGATGATCAACAGAAG 2582
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 2552 GGAAGAAGTTATCGTGTTAATAAACGCGTTATGGCCTCACAGCTTGATGATCAACATAAG 2611
Query 2583 CCTCTCAAGATTGTTGCCTCGCAGCGGAAACCGGTACCAATGATGCCATCAATATTCGCA 2642
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||
Sbjct 2612 CCTCTCAAGATTGTTGCGTCGCAGCGGAAACCGGTACCAATGATGCAATCGATATTCGCA 2671
Query 2643 CCATGCTTCTACTAATTAATTT-TGTATCATTAT 2675
|||||||||||||||||||| | | |||||||||
Sbjct 2672 CCATGCTTCTACTAATTAATATCT-TATCATTAT 2704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 132942398950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5