BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924929
Length=445
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61097.1 | Symbols: | Expressed protein | chr1:22506919-225... 431 3e-120
AT1G61095.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 165 3e-40
> AT1G61097.1 | Symbols: | Expressed protein | chr1:22506919-22507947
REVERSE LENGTH=686
Length=686
Score = 431 bits (233), Expect = 3e-120
Identities = 363/423 (86%), Gaps = 19/423 (4%)
Strand=Plus/Plus
Query 35 AATTCTCGAGGCTATTCAGAAAATA-CTCAAGGCTATGGAGGCGGCTAATGGAATTGC-T 92
|||||||||||| |||||||||| | |||||||||||||||||||||||| ||||| |
Sbjct 137 AATTCTCGAGGCAATTCAGAAAA-AGCTCAAGGCTATGGAGGCGGCTAATAGAATTCCGG 195
Query 93 GACGACAAATATGAAAAAGGGTTC-TTCGATGAGTACATGTTCTGTTTCAGAAACTGCTA 151
|| |||||| |||||||| ||| || ||||||||||||||||||||||||||| ||||
Sbjct 196 GA-GACAAAGATGAAAAACAATTCGTT-GATGAGTACATGTTCTGTTTCAGAAACAGCTA 253
Query 152 CACTGAGGATGAAACTGTGAATCACATGAGCAATAAGTTTCCTTCTTCAGTA-C--C--- 205
||||||| ||||||||||| |||||||| ||||||||||| |||| |||| | |
Sbjct 254 CACTGAGAATGAAACTGTGTTTCACATGAAAAATAAGTTTCCGTCTTTAGTACCTGCGGA 313
Query 206 TGCGGATGTGAGAAAGTTCTTTAAATTGTTGTTATCGGCGACAGGTAAAGAGCCAAAAAA 265
||||||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||
Sbjct 314 TGCGGATGTGAGAAAGTTCTTTAAATTGTTGATATCAGCGACCGGTAAAGAGTCAAAAAA 373
Query 266 GGCGTATCTCAAGGACGCTGAAGATTGTTCGTTTC-ATAGAAGGAAACTGATGCGTGATA 324
||||||||||||||| ||||||| ||||| || || | ||| | | | | |||||| |
Sbjct 374 GGCGTATCTCAAGGATGCTGAAGCTTGTTGGTCTCGA-AGATGTAGTCAGGGGCGTGACA 432
Query 325 CTTCTGAGGAAGCTAAGAACAGTCAAGGTGAGGCCAGTACATCTCACATATGTAAACCTA 384
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 433 CTTCTGAGGAAGCTAAGAACAGTCAAGGTGAGGCCAGTACATCTCACAAATGTGAACGTA 492
Query 385 ACTGCAAGAAGCGTTATCCCAAA-TTCAAAAAACATTAATAGTACT-ATTCAAAGAATAC 442
|||||||||| |||||||||||| ||| |||| ||||||| | | || ||||| ||||
Sbjct 493 ACTGCAAGAAACGTTATCCCAAAATTCCGAAAA-ATTAATACTT-TGAT-CAAAGGATAC 549
Query 443 GTT 445
|||
Sbjct 550 GTT 552
> AT1G61095.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G61093.1);
Has 17 Blast hits to 13 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:22504514-22505511
REVERSE LENGTH=700
Length=700
Score = 165 bits (89), Expect = 3e-40
Identities = 223/283 (79%), Gaps = 28/283 (10%)
Strand=Plus/Plus
Query 123 GAGTACATGTTCTGTTTCAG-AAACTGCTACACTGAGGATGAAACTGTGAATCACATGAG 181
|||| ||||||||||||| | |||||| ||||| ||| |||||||||||||||| || ||
Sbjct 235 GAGTTCATGTTCTGTTTC-GAAAACTGTTACACAGAGAATGAAACTGTGAATCATAT-AG 292
Query 182 --CAATAAGTTTCCTTCTTCA-GTACCTGC-GGA-TGTGAGAAAG-TTCTTT-A-AATTG 233
| | ||||||||||||| | ||||| | || ||| || ||| |||||| | || |
Sbjct 293 TTC-AGAAGTTTCCTTCTT-ACGTACC--CAAGAGTGTAAG-AAGTTTCTTTCAGAA--G 345
Query 234 TTGTTATCGGCGA-CAGGTAAAGAGCCAAAAAAGGCGTATCTCAAGGACGCTGAAG-AT- 290
| || | || | | | ||||| ||| | |||||||||| | ||| ||||||| ||
Sbjct 346 TCCATAGCCTTGATC-GATGAAGAGTCAAGAGAGGCGTATCTTACGGATGCTGAAGAATG 404
Query 291 TGTTCGTTTCATAGAAGGAAAC-TGATGCGTGATACTTCTGAGGAAGCTAAGA-ACAGTC 348
|| | || | | ||||||| | | | ||||||||||||||||||||||||| | ||||
Sbjct 405 TGCTAGTGT-A-AGAAGGAGTCAGGCT-CGTGATACTTCTGAGGAAGCTAAGAGA-AGTC 460
Query 349 AAGGTGAGGCCAGTACATCTCACATATGTAAACCTAACTGCAA 391
|||||||||||||||||||||||| |||| |||||||||||||
Sbjct 461 AAGGTGAGGCCAGTACATCTCACAAATGTGAACCTAACTGCAA 503
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21162722329
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5