BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924936
Length=583
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61065.1 | Symbols: | Protein of unknown function (DUF1218)... 920 0.0
> AT1G61065.1 | Symbols: | Protein of unknown function (DUF1218)
| chr1:22490244-22491461 REVERSE LENGTH=860
Length=860
Score = 920 bits (498), Expect = 0.0
Identities = 552/578 (96%), Gaps = 4/578 (1%)
Strand=Plus/Plus
Query 1 TTGCTTTGATTTCG-GCAGCTATGTCTTCGGTGTTGCTACTTCTTCTGGTGTTCGTGTTT 59
|||||| || || | ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 112 TTGCTTCGAATT-GAGCAGCTATGGCTTCCGTGTTGCTACTTCTTCTGGTGTTCGTGTTT 170
Query 60 GATCTCATTGCTTTTGGTCTTGCTGTTGCTGCAGAGCAACGAAGAACCACCTGGCAAATT 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GATCTCATTGCTTTTGGTCTTGCTGTTGCTGCAGAGCAACGAAGAACCACCTGGCAAATT 230
Query 120 TCTAGAGAATCAAAAGAATTAAGCTACTGTGTGTATGACAAGGATATAGCAACGGGTCTC 179
||||||||||||| ||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 231 TCTAGAGAATCAAGAGATTTGAGCTACTGTGTGTATGACAAGGACATAGCAACGGGTCTC 290
Query 180 GGAGTCAGTTCTTTCTTGGTTTTATTAGCGAGTCAGCTCTTAATAATGGTGGCGAGCCGA 239
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 291 GGAGTCGGTTCTTTCTTGGTCTTATTAGCGAGTCAGCTCTTAATAATGGTGGCGAGCCGA 350
Query 240 TGTTTGTGCTGTGGTAGAGCATTGACACCAAGTGCG-TCTAGATCTTGGGCAGTTTTTCT 298
||||| |||||||| ||||||||||||||||||| | || |||||||||||| |||||||
Sbjct 351 TGTTTATGCTGTGGAAGAGCATTGACACCAAGTG-GTTCAAGATCTTGGGCAATTTTTCT 409
Query 299 CTTCATCACCACTTGGGTTTTCTTCTTCATAGCACAAGTGTGCTTACTTGCTGGCTCTGT 358
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 410 CTTCATCACCACCTGGGTTTTCTTCTTCATAGCACAAGTGTGTTTACTTGCTGGCTCTGT 469
Query 359 ACGAAACGCTTACCATACAAAGTACCGTGTCTACTTTGGGAACACTTCTCCTTCTTGTCG 418
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 470 ACGAAACGCTTACCATACAAAGTACCGTGTCTACTTTGGTAACACTTCCCCTTCTTGTCG 529
Query 419 ATCACTGAGGAAAGGCGTGTTTGGGGCTGGAGCAGCATTCATAGTGCTCACGGGGATTGT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ATCACTGAGGAAAGGCGTGTTTGGGGCTGGAGCAGCATTCATAGTGCTCACGGGGATTGT 589
Query 479 CTCCGAGCTTTACTATGTGACCCTTTCGAGGGCCAAAGATTTTCAACCTCCAAGAGATCC 538
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 590 CTCCGAGCTTTACTATGTGACCCTTTCGAGGGCCAAAGACTTTCAACCTTCAAGAGATCC 649
Query 539 CGGTATCCGAATGAGTAGCATATAGAACTTACACCTGC 576
||||||||||||||||||| | ||||||||||||||||
Sbjct 650 CGGTATCCGAATGAGTAGCCTGTAGAACTTACACCTGC 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28030654026
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5