BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924938
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT1G61050.1 | Symbols: | alpha 1,4-glycosyltransferase family ... 2117 0.0
> AT1G61050.1 | Symbols: | alpha 1,4-glycosyltransferase family
protein | chr1:22486736-22488284 FORWARD LENGTH=1549
Length=1549
Score = 2117 bits (1146), Expect = 0.0
Identities = 1271/1332 (95%), Gaps = 5/1332 (0%)
Strand=Plus/Plus
Query 26 ATGGAACAGAGCAGAAGAACAGAACAAGTTCTGTTAGTGCAGAGATTGAAAAGATTGATA 85
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGAACAGAGCAGAAGAACAGAACAAGTTCTGTTAGTGCAGAGATTAAAAAGATTGATA 60
Query 86 GTCTCTTTTGTTTTTTGTCTTCCCATGtctcttcttggtctccttctcatgcttctctta 145
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCTCCTTTGTTTTTTGTCTTCCCATGTCTCTTCTTGGTCTCCTTCTCATGCTTCTCTTA 120
Query 146 atctacaacagcttctctgtcttctctcttcatcttGTT-CCAACCTCACCTATTCAATC 204
||||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||
Sbjct 121 ATCTATAACAGCTTCTCTGTTTTCTCTCTTCATCTTGTTCCCAACC-AACCTATTCAATC 179
Query 205 TACCCTTTCACCAACtcatcttcagattcttcatcatcagacatcaacatcatcatctca 264
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 180 CACTCTTTCACCAACTCATCTTCAGATTCTTCATCACCAGACATCAACATCATCATCTGT 239
Query 265 gtcagattcttcatTGTTGCTTGTGGTGAAAGAAACCTCTTTAGGGTTCATACAGAAGCA 324
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GTCAGATTCTTCATTGTTACTTGTGGTGAAAGAAACCTCTTTAGGGTTCATACAGAAGCA 299
Query 325 GAACGTTTCGTCTACGAGGACAGAGAGAAAGACGAGGAGATTCAAGAGAAGAACCGAGTT 384
|||||||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||
Sbjct 300 GAACGTTTCGTCGACGAGGATAGAGAAAAAGACGAGGAGATTCAAGAGAAGTACCGAGTT 359
Query 385 AACTTCTGAGATAACACAGCGGTTACAAGTCAAATCAAGACAGAGATTTAAGACGAAGTT 444
|||| ||| ||||||||||||||||||||||||||||||||| ||||| |||||| | |
Sbjct 360 AACTCCTGCGATAACACAGCGGTTACAAGTCAAATCAAGACAAAGATTCCAGACGAGGGT 419
Query 445 CAAGTCTTTCTTGTCCAAATCATCTTGTGAGTCACTCTTCTTCATGACTTGGATCTCCTC 504
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 420 CAAGTCTTTGTTGTCCAAATCTTCTTGTGAGTCACTCTTCTTCATGACTTGGATCTCCTC 479
Query 505 CATCGAATCTTTCGGTGATCGAGAGCGATTTACCATAGAGAGTCTCTTCAAATTTCACCC 564
||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 480 CATAGAATCTTTCGGTGATCGAGAGCGATTCACTATAGAAAGTCTCTTCAAATTTCACCC 539
Query 565 AAACAGCTGTTTGATCTTGGTCTCAAACTCATTTGACTGTGACAGAGGAACCCTAATCTT 624
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 540 AAATGGCTGTTTGATCTTGGTCTCAAACTCATTTGACTGTGACAGAGGAACCTTAATCTT 599
Query 625 GAAACCCTTTACAGATAAAGGGCTTAAAGTGCTTCCAATTAAACCTGATTTTGCATACAT 684
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 600 GAAACCCTTTACAGATAAAGGGCTTAAAGTGCTTCCAATCAAACCTGATTTTGCTTACAT 659
Query 685 CTTCAAAGATACATCAGCAGAGAAATGGTTTGAAAGATTGAAGAAAGGAACGTTTAGTCC 744
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 660 CTTCAAAGATACATCAGCAGAGAAATGGTTTGAAAGATTGAAGAAAGGAACACTCAGTCC 719
Query 745 AGGAGTGATTCCATTAGAGCAAAACCTCTCTAACCTTCTAAGATTAGTCTTGCTCTACAA 804
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 720 AGGAGTGATTCCATTAGAGCAAAACCTCTCAAACCTTCTAAGATTAGTCCTGCTCTACAA 779
Query 805 ATACGGCGGAATCTACTTAGACACAGACGTAATAATCCTCAAATCTCTCAGCAATCTCCA 864
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 780 ATACGGCGGAATCTACTTAGACACAGACGTTATAATCCTCAAATCTCTCAGCAATCTCCA 839
Query 865 CAACGTAATCGGAGCACAAACAGTTGACCCGGTTACAAGAAAATGGAGTAGGCTCAACAA 924
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 840 CAACGTAATCGGAGCACAAACAGTTGACCCGGTTACAAAAAAATGGAGTAGGCTCAACAA 899
Query 925 CGCGGTGCTCATCTTCGACAAGAACCATCCTTTGCTTAAAAGGTTCATCGACGAATTCTC 984
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CGCGGTGCTCATCTTCGACAAGAACCATCCTTTGCTTAAAAGGTTCATCGACGAATTCTC 959
Query 985 AAGAACCTTCAACGGTAACAAATGGGGCCACAACGGTCCCTACTTAGTGTCGAGAGTCAT 1044
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 960 AAGAACCTTTAACGGTAACAAATGGGGACACAACGGTCCCTACTTAGTGTCGAGAGTCAT 1019
Query 1045 TGCAAGAATCAACATTTCCTCCTCTTCGGATTTGGGATTCTCAGTTCTTCCACCATCTGC 1104
| |||||||||| || || |||||||| |||||||||||||| |||||||||||||||||
Sbjct 1020 TACAAGAATCAAGATATCATCCTCTTCAGATTTGGGATTCTCTGTTCTTCCACCATCTGC 1079
Query 1105 ATTTTATCCGGTGGATTGGACTAGAATCAAAGGATTCTACAGAGCGCCGACGAGTGAGAC 1164
||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1080 ATTTTATCCGGTGGACTGGACTAGAATCAAAGGATTCTACAGAGCGCCCACGAATGAGAG 1139
Query 1165 CGAGGCTAACTGGTTGCGGAAGAGGCTTACGCATTTACGCAAAAATACATTCGCTGTTCA 1224
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CGATGCT---TGGTTGCGGAAGAGGCTTACGCATTTACGCAAAAATACATTCGCTGTTCA 1196
Query 1225 TCTTTGGAACAGAGAGAGTAAGAAACTTAGGATTGAAGAAGGAAGCATCATTCATCAACT 1284
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1197 TCTTTGGAACAGAGAGAGTAAGAAACTCAGGATTGAAGAAGGAAGCATCATTCATCAACT 1256
Query 1285 CATGTCTTATTCTTGCATCTTTTGTAACTCTTCTTCTTTACATTTAAGTTAAAACATGTA 1344
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 CATGTCTCATTCTTGCATCTTTTGTAACTCTTCTTCTTTACATTTAAGTTAAAACATGTA 1316
Query 1345 AAGTATATTTCC 1356
||||| ||||||
Sbjct 1317 AAGTAAATTTCC 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5