BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924945
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60986.1 | Symbols: SCRL4 | SCR-like 4 | chr1:22459000-22459... 571 2e-162
AT2G25687.1 | Symbols: | Encodes a defensin-like (DEFL) family... 375 1e-103
AT1G60989.1 | Symbols: SCRL7 | SCR-like 7 | chr1:22462160-22462... 222 2e-57
> AT1G60986.1 | Symbols: SCRL4 | SCR-like 4 | chr1:22459000-22459650
FORWARD LENGTH=548
Length=548
Score = 571 bits (309), Expect = 2e-162
Identities = 382/416 (92%), Gaps = 9/416 (2%)
Strand=Plus/Plus
Query 1 GAAGAAACTTGCAAGAAAATATGAAATTTGCTGCAATCTTCTTAGTTAATTGTGTCTTAT 60
||| |||||| |||||||||||||| |||||||||||||| || |||| |||||||||||
Sbjct 53 GAAAAAACTTACAAGAAAATATGAAGTTTGCTGCAATCTTGTTGGTTACTTGTGTCTTAT 112
Query 61 TCTCCCTTCTCTCAAGCCACCTTTCACAAGGTGAAGAATCAAGCATAAATATTGATGCGC 120
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 113 TCTCCCTTCTCCCAAGCCATCTTTCACAAGGTGAAGAATCAAGCATGAATATTGATGCGC 172
Query 121 AGAGAAGGCCATGGTGTCCGTCTAAAAAACAGGTGTTCAGTGGTTCGTGTGGAAATGATG 180
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 173 AGAGAAGGCCATGGTGTCCGTCTAAAAAACAAGTGTTCGGTGGTTCGTGTGGAAATGATG 232
Query 181 GAGCACAACAATGTCTAAATAACTTATTATGGACATGGAATCCAAGTGTAAGGCTCAGCC 240
||||||||||||||||||||||||||||| | |||||| |||||||||||||||| ||||
Sbjct 233 GAGCACAACAATGTCTAAATAACTTATTAAGTACATGGGATCCAAGTGTAAGGCTTAGCC 292
Query 241 CTA-TCTACTGCAATTGCACTCCTCAACCTAACAATAATATTCTTTGTAGTTGTCCTAAC 299
| | ||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 293 C-AGTCTCCTGCAATTGCACTCCTCAACCTAACAACAATATTCTTTGCAGTTGTCCTAAC 351
Query 300 ATGATTTGCCCATAGAAAACGTCTATTTAAGACCCAAACTGATGTTCTAAATCCTTTTTC 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 352 ATGATTTGCCCATAGAAAACGTCTATTTAAGACCCAAACTGTTGTTCTAAATCATTTTTA 411
Query 360 TCTGTATCAAGAATAAC-------GTTTCAGTTTCTAATGAAAACCCCGAAGACTT 408
|||||||||| ||||| |||||||||||| ||||||||||||||||||
Sbjct 412 TCTGTATCAATAATAATAATATATGTTTCAGTTTCTCGTGAAAACCCCGAAGACTT 467
> AT2G25687.1 | Symbols: | Encodes a defensin-like (DEFL) family
protein. | chr2:10939037-10939418 FORWARD LENGTH=281
Length=281
Score = 375 bits (203), Expect = 1e-103
Identities = 253/277 (91%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 20 TATGAAATTTGCTGCAATCTTCTTAGTTAATTGTGTCTTATTCTCCCTTCTCTCAAGCCA 79
|||| | ||||||||||| ||||| |||| |||||||||||||||||||||| |||||||
Sbjct 1 TATG-AGTTTGCTGCAATATTCTTGGTTACTTGTGTCTTATTCTCCCTTCTCCCAAGCCA 59
Query 80 CCTTTCACAAGGTGAAGAATCAAGCATAAATATTGATGCGCAGAGAAGGCCATGGTGTCC 139
||||||||||||||||||||||||||| || |||| ||| ||||||||||||||||||||
Sbjct 60 CCTTTCACAAGGTGAAGAATCAAGCATGAACATTGCTGCACAGAGAAGGCCATGGTGTCC 119
Query 140 GTCTAAAAAACAGGTGTTCAGTGGTTCGTGTGGAAATGATGGAGCACAACAATGTCTAAA 199
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 120 ATCTAAAAAACAAGTGTTCAGTGGTTCGTGTGG-AATGATGGAGCACAACAATGTCTAAA 178
Query 200 TAACTTATT-ATGGACATGGAATCCAAGTGTAAGGCTCAGCCCTATCTACTGCAATTGCA 258
||||||||| | | |||||| |||||||||||||||| ||||| |||| |||||||||||
Sbjct 179 TAACTTATTCA-GTACATGGGATCCAAGTGTAAGGCTGAGCCCAATCTCCTGCAATTGCA 237
Query 259 CTCCTCAACCTAACAATAATATTCTTTGTAGTTGTCC 295
||||||||| |||| | |||||||||||||||||||
Sbjct 238 CTCCTCAACTTAACTACCATATTCTTTGTAGTTGTCC 274
> AT1G60989.1 | Symbols: SCRL7 | SCR-like 7 | chr1:22462160-22462721
FORWARD LENGTH=477
Length=477
Score = 222 bits (120), Expect = 2e-57
Identities = 313/399 (78%), Gaps = 42/399 (11%)
Strand=Plus/Plus
Query 1 GAAGAAACTTGCAAG-AA-A-ATATGAAATTTGCTGCAATCTTCTTAG-TTAATTGTGTC 56
||| |||||| | || || | ||||||| || |||||||||||||| | || | ||||
Sbjct 50 GAA-AAACTTAC-AGAAACACATATGAAGTTGGCTGCAATCTTCTTGGCTT-CCTCTGTC 106
Query 57 TTATTCTCCCTTC-TCTCAAGCCACCTTTCACAAGGTGAAGAATCAAGCATAAATATTGA 115
||| ||||||||| || ||| ||||||||| |||||||||| | || ||
Sbjct 107 TTACTCTCCCTTCTTC-CAATCCACCTTTCGCAAGGTGAAG---C-TGC--------TG- 152
Query 116 TGCGCAGAGAAGGCCA-TGGTGTCCGTCTAAAA-AACAGGTGTTCAGTGGTTCGTG-TGG 172
| | |||||||| || ||||| || || |||| |||| |||||||| ||||| || |
Sbjct 153 -G-GGAGAGAAGG-CAGTGGTGCCCATC-AAAACAACAAGTGTTCAGAGGTTCATGCT-C 207
Query 173 AAATGATGGAGCACAACAATGTCTAAATAACTTATTATGGACATGGAATCCAAGTGTAAG 232
| | ||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 208 AGACGATGGAGGACAAAAATGTCTAAATGACTTATTATGGACATGGAATCCAAGTGTAAG 267
Query 233 GCTCAGCCCTATCTACTGCAATTGCACTCCTCAACCTAACAATAATATTCTTTGT-AGTT 291
||| |||||||||||||| ||||||||||| ||| | |||| || ||| || | ||
Sbjct 268 GCTTAGCCCTATCTACTGTGATTGCACTCCTAAACGTCACAACAAGCGTCTCTGCGA-TT 326
Query 292 GTCCTAACATGATTTGCC-CATAGAAA-ACGTCTATTTAAGA-CCCAAACTGATGTTCTA 348
|||||| |||||||||| | || ||| |||||||||||||| ||||||||| |||||||
Sbjct 327 GTCCTAGTATGATTTGCCTC-TA-AAACACGTCTATTTAAGATCCCAAACTGTTGTTCTA 384
Query 349 AATCCTTTTTCTCTGTATCAAGAATAACGTTTCAGTTTC 387
|| || || ||||||| ||||| |||||| ||||
Sbjct 385 --TC-TTC--CTATGTATCATTAATAATGTTTCAATTTC 418
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19302815616
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5