BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924946

Length=312
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60983.1 | Symbols: SCRL8 | SCR-like 8 | chr1:22455320-22455...   444    3e-124


> AT1G60983.1 | Symbols: SCRL8 | SCR-like 8 | chr1:22455320-22455589 
FORWARD LENGTH=270
Length=270

 Score =  444 bits (240),  Expect = 3e-124
 Identities = 260/270 (96%), Gaps = 0/270 (0%)
 Strand=Plus/Plus

Query  22   ATGAAGTTAGCTGCAATTTTCTTGGTTTCTTGTGTCTTATTCTCTCTTGTCCCAAGCCTA  81
            ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct  1    ATGAAGTTAGCTGCAATTTTCTTGGTTTCTTGTGTCTTATTGTCTCTTCTCCCAAGCCTA  60

Query  82   ACCATAGCGGAGAAAAGGCCCTGGTGTCCAACAAGAAAACAAATATTTGATGGATCATGC  141
            ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct  61   ACCATTGCGGAGAAAAGGCCGTGGTGTCCAACAAGAAAACAAATATTTGATGGTTCATGC  120

Query  142  AATAGAACTGATTACACACAATGCTTTAACGACTTAAGAAACACATGGGATGATATTGGA  201
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  121  AATAGAACTGATTACACACAATGCTTTAACGACTTAAGAAATACATGGGATGATATTGGA  180

Query  202  GATCTTGGTCCAACCGATTGCACTTGCACTCCTCAACCACAGAACAAACGTCTCTGTTAT  261
            |||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  181  GATCTTTGTCCGACCGATTGCACTTGCACTCCTCAACCACAGAATAAACGTCTCTGTTAT  240

Query  262  TGTCGTTACTTGCCTTGTCCTAGTACTTAA  291
            |||||||||||||||||||||||||| |||
Sbjct  241  TGTCGTTACTTGCCTTGTCCTAGTACCTAA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14477111712


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5