BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924948
Length=574
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60970.1 | Symbols: | SNARE-like superfamily protein | chr1... 898 0.0
> AT1G60970.1 | Symbols: | SNARE-like superfamily protein | chr1:22447848-22449526
REVERSE LENGTH=833
Length=833
Score = 898 bits (486), Expect = 0.0
Identities = 544/573 (95%), Gaps = 0/573 (0%)
Strand=Plus/Plus
Query 1 AGATTTCTTCACCTTACGCCATGGAATTACCCCCAAAAGTGAAAAACATTTTGCTTTTGG 60
|||||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 120 AGATTTCTTCTCCTTAAGCCATGGAATTGCCCCCAAAAGTGAAAAACATCTTGCTTTTGG 179
Query 61 ATTCTGAAGGAAAGCGTGTAGCGGTTAAGTATTACTCAGATGACTGGCCAACGAATTCAG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 180 ATTCTGAAGGAAAGCGTGTAGCGGTTAAGTATTACTCAGATGACTGGCCAACAAATTCAG 239
Query 121 AGAAGGAAGCCTTCGAAAAATCGGTGTTCACCAAGACTCAGAAAACTAATGCTTGGACCG 180
||||||| ||||||||||| ||||| || |||||||||||||| |||||| ||||||
Sbjct 240 CTCAGGAAGCGTTCGAAAAATCCGTGTTTACAAAGACTCAGAAAACAAATGCTAGGACCG 299
Query 181 AAGTGGAAGTGACAGCATTGGAGAACAACATTGTTCTGTACAAATTTGTGCAAGATCTCC 240
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 AAGTGGAAGTGACAGCACTGGAGAACAACATTGTTGTGTACAAATTTGTGCAAGATCTCC 359
Query 241 ATTTCTTTGTTACGGGCGGTGAAGAGGAAAACGAGCTTATATTAGCCAGTGTGCTTGAGG 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 360 ATTTCTTTGTTACGGGCGGTGAAGAGGAAAACGAGCTTATCTTAGCCAGTGTGCTTGAGG 419
Query 301 GACTCTTCGATGCAGTGACCCTTCTCCTTAGAGGCAATGTTGATAAGAGAGAGGCACTGG 360
||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 420 GACTCTTTGATGCAGTGACCCTTCTCCTTAGAAGCAATGTTGATAAGAGAGAGGCACTAG 479
Query 361 ACAACCTTGATCTCATCTTCCTGTGCTTTGATGAAATTATCGATGGCGGTATTGTTCTGG 420
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 480 ACAACCTTGATCTCATCTTTCTAAGCTTTGATGAAATTATCGATGGCGGTATTGTTCTGG 539
Query 421 AGACGGACGCAAATGTGATCGCAGGTAAAGCAGGGATCAATAGCGCTGACCCTAACGCTC 480
||||||| |||||||| || |||||||||||||||||||||||| |||||||||||||||
Sbjct 540 AGACGGATGCAAATGTAATAGCAGGTAAAGCAGGGATCAATAGCACTGACCCTAACGCTC 599
Query 481 CTCTATCCGAGCAGACGATAAGTCAGGCACTCGCGACTGCAAGAGAACATTTGACAAGGT 540
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 CTCTATCCGAGCAGACGATAAGTCAAGCACTCGCGACTGCAAGAGAACATTTGACAAGGT 659
Query 541 CACTTATGAAATGATGTGTGTGTTGCTCTTCGG 573
||||||||||||||||||||| |||||||||||
Sbjct 660 CACTTATGAAATGATGTGTGTTTTGCTCTTCGG 692
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27578546703
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5