BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924952

Length=217
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicas...   228    2e-59


> AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase 
L4B | chr1:22430847-22438877 REVERSE LENGTH=3877
Length=3877

 Score =  228 bits (123),  Expect = 2e-59
 Identities = 156/171 (91%), Gaps = 5/171 (3%)
 Strand=Plus/Minus

Query  47   TTACATTTTCAAATCAG-TGAAACTCTCTTGCTTCTGCGGCGGAATAGGGAAACTCCGGC  105
            ||| ||||||||| ||| |||||||||  ||||||||||||| ||||| |||||||||||
Sbjct  178  TTA-ATTTTCAAA-CAGATGAAACTCTAGTGCTTCTGCGGCGAAATAGTGAAACTCCGGC  121

Query  106  GGCGAAACTTTTCCGGTAAGATCTCGAGGAGAGAGAGAAGAAAGAGCGCGTCTCCAGTTA  165
            | ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct  120  GACGAAACTTTTCCGGTAAGATCACGAGGCGAGAGAGAAGAAAGAGCGCGTCTCCAATTA  61

Query  166  CAGCATTT-TGTGATTTCCGTATGGCGGGATAGTTAAAAAGGTTCACTCTC  215
            |||| ||| || ||||| |||||||||||||||||||||||||||||||||
Sbjct  60   CAGC-TTTCTGCGATTTTCGTATGGCGGGATAGTTAAAAAGGTTCACTCTC  11



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9701675557


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5