BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924960

Length=561
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60870.1 | Symbols: MEE9 | maternal effect embryo arrest 9 |...   856    0.0  


> AT1G60870.1 | Symbols: MEE9 | maternal effect embryo arrest 9 
| chr1:22409472-22410654 FORWARD LENGTH=1111
Length=1111

 Score =  856 bits (463),  Expect = 0.0
 Identities = 528/559 (94%), Gaps = 6/559 (1%)
 Strand=Plus/Plus

Query  1    CATTATTGTCATCCACTTGTTCCAAAATTCCACATTACAAGAATCATTCGATTCTCTTCT  60
            ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct  142  CATTATTGTCATCCACTTGTTGCAAAGTTCCACATTACAAGAATCATTCGATTCTCTTCT  201

Query  61   ATCATCATCTTC--GATCTCCATC-AAATTCACACCAAACATGGAAGCTCTAATTCACCA  117
            ||||||||||||    |||||||| |||||||| | ||||||||||||||||||||||||
Sbjct  202  ATCATCATCTTCTTCTTCTCCATCAAAATTCAC-CAAAACATGGAAGCTCTAATTCACCA  260

Query  118  CTTCACTCTCCTCTCCGATCAAGCTCTTGTCGACAAAACATTCGACCCTTCAAGAATCGA  177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  261  CTTCACTCTCCTCTCCGATCAAGCTCTTGTCGACAAAACATTCGACCCTTCAAGAATCGA  320

Query  178  AGACCTCATGCGTCTCTTCGAAGTCGATTCCTACAAAGCTTGGGCAGCTCTCGAATCTGA  237
             ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct  321  GGACCTCATGCGTCTCTTTGAAGTCGATTCATACAAAGCTTGGGCAGCTCTCGAATCCGA  380

Query  238  GCAGCAACAAGAACTCGAAGAAGCTGAAGAAACTCTCCGTGAAGCTGAACTCGAACTCGA  297
             |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||
Sbjct  381  ACAGCAACAAGAACTCGAAGAAGCTGAAGAATCTCTCCGTGAAGCTGAACTTGAACTTGA  440

Query  298  TCGGGATATGGAATGGGGAATGGAGGAGTACCGGCGAACGTTGGAGGAGATGGAGAGGAT  357
            |||||||||||| ||||| |||||||||||  |||| |||||||||||||||||||||||
Sbjct  441  TCGGGATATGGAGTGGGGGATGGAGGAGTATAGGCGGACGTTGGAGGAGATGGAGAGGAT  500

Query  358  GGAGGCGGCGGAGCTGAAAGAGCTTGAGGAGAAAGCGGAGACTGCTCGGAGAACGGGAAA  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  501  GGAGGCGGCGGAGCTGAAAGAGCTTGAGGAGAAAGCGGAGACTGCTCGGAGAACGGGGAA  560

Query  418  TTTAATGGAGAAAGCCGCGACAATTGCCGCGAAACGGCATATTGCAGCGGCGATGGGATC  477
            ||||||||||||||| |||||| ||||||||||||| |||||||| ||||||||||||||
Sbjct  561  TTTAATGGAGAAAGCGGCGACAGTTGCCGCGAAACGACATATTGCGGCGGCGATGGGATC  620

Query  478  AGCCGCTGCGTCTATGAGATCAGCTTGGAAGACTGCAGCTGGGAATAAGGTTCATCCATC  537
            |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  621  AGCCGCCGCGTCTATGAGATCAGCTTGGAAGACTGCAGCTGGAAATAAGGTTCATCCATC  680

Query  538  TTGATCGATGAAT-ATGAT  555
            ||||||||||| | |||||
Sbjct  681  TTGATCGATGA-TGATGAT  698



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26925502792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5