BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924966
Length=2464
Score E
Sequences producing significant alignments: (Bits) Value
AT5G28740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1434 0.0
> AT5G28740.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:10780647-10783911 FORWARD LENGTH=2923
Length=2923
Score = 1434 bits (776), Expect = 0.0
Identities = 1791/2267 (79%), Gaps = 125/2267 (6%)
Strand=Plus/Plus
Query 88 TAAAGCCATGGTGGAGATATTTGATTTCGAAATCT-AAGGCTCCTTTCAAGGATCGATTC 146
|||||| |||||||||||| | || | ||| || || ||||||| ||| | || |||
Sbjct 110 TAAAGCTATGGTGGAGATACCTAATCGCAAAAGCTGAA-TCTCCTTTTAAGAAACGCTTC 168
Query 147 GTCATCTATGAGAGAGCCATCAAAGCTCTTCCCGGTAGCTACAAGCTTTGGTACGCGTAT 206
||||||| |||||||| | ||||| ||||| || ||||| || || |||||||| |||
Sbjct 169 ATCATCTACGAGAGAGCTTTAAAAGCACTTCCTGGAAGCTATAAACTGTGGTACGCTTAT 228
Query 207 CTCCGGGAACGTCTCGATTTCGTTAGTG-ATTTGTGTGTTAC-CGATCCACCGTACGAGA 264
|| | ||||| |||||| ||||||| | ||||| |||||| | |||||| ||||||
Sbjct 229 CTTAGAGAACGACTCGATATCGTTAG-GAATTTGCCTGTTACTC-ATCCACAGTACGA-T 285
Query 265 TCT-TGAACAATACTTTTGAAAGAGCTCTGGTTACGATGCATAACATGCCTAGGATCTGG 323
||| | |||||||||||||| |||| ||| ||||| |||||||| ||||||||||| |||
Sbjct 286 TCTCTCAACAATACTTTTGAGAGAGGTCTTGTTACTATGCATAAGATGCCTAGGATTTGG 345
Query 324 CTCT-TCTATCTTCAAAC-CCTA-ATTTCGCAG-AGATTGATTACTAGGACTCGTAAAAC 379
| | | |||||||| || | || || ||| | |||||||||| ||||||| |||
Sbjct 346 GT-TATGTATCTTCAGACTCTTACGGTT--CAGCA-ATTGATTACTCGGACTCGGCGAAC 401
Query 380 TTTCGATCGGGCTCTCTCTGCTCTT-CCCGTTAGACAACATGGTAGAATTTGGGAATCTT 438
|||||| || || || | |||| || || |||| ||||||| ||| ||||||||| | |
Sbjct 402 TTTCGACCGTGCGCTTTGTGCT-TTACCTGTTACTCAACATGATAGGATTTGGGAACCGT 460
Query 439 ATCTCGAATTTGTGACTCAGGAA-GGTG-TTCCTGTGGAGACTTCGA-TTAGAGTTTATA 495
|||| | ||||||| ||| || || | ||||| | |||||||| | |||| |||||||
Sbjct 461 ATCTTGTGTTTGTGAGTCA-AAATGG-GATTCCTATTGAGACTTC-ACTTAGGGTTTATA 517
Query 496 GAAGGTATCTTA-GCTATGATCCAAGTCACATTGAGAATTTTATTGAGTTTC-TGTTGAA 553
|||||||||||| | |||||||| ||||| |||||| | ||||||||||||| || | ||
Sbjct 518 GAAGGTATCTTATG-TATGATCCTAGTCATATTGAGGAGTTTATTGAGTTTCTTG-TCAA 575
Query 554 GTC-GGGTCGTTGGCAAGAGTCCGCAGAGTA-TTTGGCCTCTGTGTTGAGTGGCCAAT-T 610
||| | | ||||||||||| || |||||| | || || |||||||||| | | ||
Sbjct 576 GTCTGAG-CGTTGGCAAGAATCTGCAGAG-AGATTAGCTTCTGTGTTGAAT-G---ATGA 629
Query 611 TCAA-TTTCAGTCTAGTAAAGGCAAGAGC-ATTTATAGCCTGTGGATGGA-TCTGCT-TG 666
| || ||| | |||| |||||| |||| | | ||| |||||| |||| | || | ||
Sbjct 630 T-AAGTTTTATTCTATTAAAGGGAAGA-CTAAGCATAAACTGTGGTTGGAGT-TG-TGTG 685
Query 667 AGGTTGTTGTTAACCATGCTAATGAGGTTTCTGGTCTTGATGTGGAGGCTATTATCAGAG 726
|| || |||| | |||||||||| | |||| |||||| |||| || |||||||| ||||
Sbjct 686 AGCTTCTTGTGCATCATGCTAATGTGATTTCGGGTCTTAATGTTGATGCTATTATAAGAG 745
Query 727 GAGGCATT-GCAAAGTTTACGGATGAAGTAGGGATGCTCTGGACTTAC-CTTGCGGATTA 784
|||| ||| | ||||||||||||||||| || ||||| ||||||| | |||||||||||
Sbjct 746 GAGGTATTAG-GAAGTTTACGGATGAAGTTGGAATGCTGTGGACTT-CTCTTGCGGATTA 803
Query 785 CTACATTAGAAAGAATATGTTCGAGAAGGCCCGTGATATCTATGAGGAGGGGATGGTGAA 844
|||||||| |||||| |||| ||||| || | ||||| ||||||||||| ||| ||||
Sbjct 804 TTACATTAGGAAGAATTTGTTGGAGAAAGCTAGGGATATTTATGAGGAGGGTATGATGAA 863
Query 845 GGTGGTCACAGTTAGGGACTTTAGTGTTATTTTTGATGCTTATTCAAGGTTTGAGGAAAG 904
||| || || || ||||| |||||||| || ||||| | ||||||| |||| ||||| ||
Sbjct 864 GGTAGTAACTGTAAGGGATTTTAGTGTGATATTTGACGTTTATTCACGGTTCGAGGAGAG 923
Query 905 T-TGTGTTGCCAA-AAGGTTGGAAGAAGTTGAAG---AAGGTGGTGAAGAATAT--GAAT 957
| | || || || || | ||| ||| | || || || ||| ||||||| || ||||
Sbjct 924 TACG-GTCGCGAAGAA-GATGG-AGATGATG-AGTTCAA-GTGATGAAGAAGATGAGAAT 978
Query 958 ---CCG-A--G-GTAGAGGATGA-G--GAAGATGTCCGTGTCAATACTT-CTCTGTC-CT 1005
| | | ||||||||||| | || ||||| || | ||| || |||||| |
Sbjct 979 GAAGAGAATGGCGTAGAGGATGATGAAGAGGATGTTCGCCTTAAT-TTTAATCTGTCGGT 1037
Query 1006 TAGAAGAGATGCAGAGTAAAATCCTGGGTGGGTATTGGTTGAATGATGGTAACGATGTTG 1065
| ||||| ||||||| || || ||| ||||| |||||||||||||| ||| |||||||
Sbjct 1038 GA-AAGAGTTGCAGAGGAAGATACTGAATGGGTTTTGGTTGAATGATGATAATGATGTTG 1096
Query 1066 ATCTGCGATTGGCTCGCTGGGAGGAACTGCTGAACAGGAGACCCGCACTTGCAAACAGTG 1125
||||| |||||||||| | ||| |||||| ||||||| ||||| ||||| ||||||||||
Sbjct 1097 ATCTGAGATTGGCTCGTTTGGAAGAACTGATGAACAGAAGACCTGCACTGGCAAACAGTG 1156
Query 1126 TTCT-CTTGAGGCAAAACCCACACAATGTTGAACAATGGCATCGTAGAGTCAAGTTGTTT 1184
| || ||| ||||| || || ||||||||||| |||||||||||||||||||| | |||
Sbjct 1157 TGCTCCTT-AGGCAGAATCCTCACAATGTTGAGCAATGGCATCGTAGAGTCAAAATATTT 1215
Query 1185 GAGGGAGACGCAG-AGAAGCAGATACTGACTTACACAGAAGCTGTGAGGACTGTGGATCC 1243
|||||| |||||| | |||||||| || || ||||||||||| ||||||||||| |||||
Sbjct 1216 GAGGGAAACGCAGCA-AAGCAGATTCTCACATACACAGAAGCAGTGAGGACTGTTGATCC 1274
Query 1244 CATGAAAGCAGTTGGTAAGTCTCCTCACACGTTATGGGTTGCTTTTGCCAAGTTGTATGA 1303
|||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1275 TATGAAAGCAGTTGGGAAG---CCTCACACCTTGTGGGTTGCTTTTGCCAAGTTGTATGA 1331
Query 1304 AACCCACAACGATTTGGTCAATGCAAGAGTGGTTCTGGACAAAGCAGTCCAAGTAAACTA 1363
|| |||||| || |||||||| | |||||| || | |||||||||||||| ||||||||
Sbjct 1332 AAACCACAAAGACCTGGTCAATACTAGAGTGATTTTTGACAAAGCAGTCCAGGTAAACTA 1391
Query 1364 CAAAACCGTGGATCATTTGGCCTGCATGTGGTGTGAGTGGGCCGCGATGGAGCTGAGACA 1423
||||||||| |||||| | ||| | |||||||||||||||| | |||||||||||||||
Sbjct 1392 CAAAACCGTAGATCATCTCGCCAGTGTGTGGTGTGAGTGGGCTGAGATGGAGCTGAGACA 1451
Query 1424 CAATAATTTCAAAGGAGCTTTAGAGCTAATGAGGCGGGCTACAGCTGCACCCTCGGTAGA 1483
||| |||||||||||||| |||||||| |||||||| |||||||||| ||| | |||||
Sbjct 1452 CAAGAATTTCAAAGGAGCATTAGAGCTGATGAGGCGTGCTACAGCTGTACCGACAGTAGA 1511
Query 1484 AGTCAGAAACAGAGTTGTTGATGTTGGGAACGAACCAGAACCAGTGCAGTTGAAGCTGTA 1543
||||||| ||||||| || || ||| || ||||||| |||| | | ||||||| |
Sbjct 1512 AGTCAGACGGAGAGTTGCTGCTGATGGCAATGAACCAGT-CCAG---A-T-GAAGCTGCA 1565
Query 1544 TAAGACCCC-GAGGCTGTGGTCACTCT-ATGTTGATCTGGAGGAAAGTGTAGGGACACTG 1601
|| || || |||||| ||||| || | ||||||||||||| |||||| | ||||| |
Sbjct 1566 TA-GATCCTTGAGGCTTTGGTC-CTTTTATGTTGATCTGGAAGAAAGTCTGGGGACGTTA 1623
Query 1602 GAATCCACGAGATCAG-CGTACGAGAGGATACTGGAATTAAGAATAGCCACACCTCATAT 1660
||||| || ||| | | | || |||| ||| |||| || |||||||| |||||||| ||
Sbjct 1624 GAATCGACAAGAGCTGTC-TATGAGAAAATATTGGATTTGAGAATAGCTACACCTCAAAT 1682
Query 1661 TATATTGAACTACGCTCAGCTTCTTGAGGAAAACAACTACTTTGAAGAGGCGTTCAAGGT 1720
|||| |||| || ||| |||||||||||||| || ||||||||||| |||||||||||
Sbjct 1683 TATAATGAATTATGCTTTTCTTCTTGAGGAAAATAAGTACTTTGAAGATGCGTTCAAGGT 1742
Query 1721 GTATGAAAGAGGTGTGAAGATGTTTAAGTATCCTCATGTGAAAGACATATGGCTGACGTA 1780
||||||||||||||| ||||| || ||||||||||||||||||||||| ||| | || ||
Sbjct 1743 GTATGAAAGAGGTGTCAAGATATTCAAGTATCCTCATGTGAAAGACATTTGGGTAACCTA 1802
Query 1781 TCTCACAAAGTTTGTTAAGAGATATGGGAAGACAAAGGTGGAGCGGGCGAGAGAGTTGTT 1840
||| ||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||
Sbjct 1803 TCTTACAAAGTTTGTCAAGAGATACGGGAAGACAAAGCTGGAGCGGGCAAGAGAGTTGTT 1862
Query 1841 TGAGAATGCTGTTTCGATGGTAAGTTCATCTGATGCTGCTCT--AC-T-ATACCTTGAGT 1896
|||| |||||||||| |||| |||||||||||| || || | ||||||| |||
Sbjct 1863 TGAGCATGCTGTTTCAATGGCCC---CATCTGATGCTG-TCAGGACGTTATACCTTCAGT 1918
Query 1897 ATGCAAAATTTGAAGAAGATTATGGTCTGGCGAAGAGG-GCGATGGATGTGTACAAACAA 1955
|||| || | ||||| |||||||||||||| || | | || ||| | || || | ||
Sbjct 1919 ATGCTAAGCTAGAAGAGGATTATGGTCTGGCTAA-ACGAGCCATGAAGGTTTATGAGGAA 1977
Query 1956 GCTACCAGAAGAGTTGCGGATGAGA-AGAAGCTTGAGATGTATGAGATATACATAGCTCG 2014
|| |||| || |||| | || | | |||||||||||||||| ||||||||||| | ||
Sbjct 1978 GCCACCAAAAAAGTTCCAGAAG-GTCAGAAGCTTGAGATGTACGAGATATACATTTCCCG 2036
Query 2015 TTCAGCAGAGAGGTTTGGTGCTCAGAAAACTAGGGAGATAT-TCCAGGAAGCCATAGAAT 2073
|||| |||| ||||||| || | ||| ||||| |||| | | |||| || ||||
Sbjct 2037 AGCAGCGGAGATATTTGGTGTTCCCAGAACAAGGGAAATATATGAAC-AAGCAATTGAAT 2095
Query 2074 CATCTGGGCTTGCAGAGAATGATGTGAAGATGATGTGCATCAGATTTGCAGAGCTGGAGA 2133
| | |||||| || | || ||||||||||| |||||||| | |||||| ||||||||||
Sbjct 2096 C-T--GGGCTTCCACATAAGGATGTGAAGATCATGTGCATAAAATTTGCTGAGCTGGAGA 2152
Query 2134 AAAGCATGGGAGA-AGTCGATCGAGCTTGTGCAGTCTACAAGTATGCCTCACAGTTTGCA 2192
|||| ||||||| | | ||||| ||| ||||| |||| |||||| |||| |||||||||
Sbjct 2153 GAAGCTTGGGAGAGATT-GATCGTGCTCGTGCACTCTATAAGTATTCCTCCCAGTTTGCA 2211
Query 2193 GACCC----TCA-AG--TG--T---GGCAGAAATGGCATGACTTGGAAATTGAACATGGC 2240
|| || || | || | || | ||||||||||| || || | | || ||
Sbjct 2212 GATCCAAGGTCCGACCCTGAATTCTGGAACAAATGGCATGAGTTCGAGGTCCAGCACGGG 2271
Query 2241 AACGAAGATACCTACAGAGAAATGCTTCGCATTAAGCGAACTGTTTC 2287
|||||||||||||||||||||||||| || || ||||||| ||||||
Sbjct 2272 AACGAAGATACCTACAGAGAAATGCTCCGTATCAAGCGAAGTGTTTC 2318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122256840091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5