BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924972

Length=905
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G42460.1 | Symbols:  | TRAF-like family protein | chr2:17676...   492    3e-138
  AT2G42480.1 | Symbols:  | TRAF-like family protein | chr2:17685...  97.1    3e-19 


> AT2G42460.1 | Symbols:  | TRAF-like family protein | chr2:17676399-17679293 
REVERSE LENGTH=1375
Length=1375

 Score =  492 bits (266),  Expect = 3e-138
 Identities = 405/472 (86%), Gaps = 9/472 (2%)
 Strand=Plus/Plus

Query  348   CTTAAAGAGGAAGGACATCTAGAGAATAACAAACTGATCATTAAAGTTGAAGTTAAAGCA  407
             ||| |||||||||||  | | |||||||||||||||||||||| ||| |||||||||| |
Sbjct  908   CTTCAAGAGGAAGGATTTTTGGAGAATAACAAACTGATCATTAGAGTGGAAGTTAAAGTA  967

Query  408   GGTGAAGAAAGATATGTAACTGGCAAGGAGATGTTTGAAATCGAAGGTTTTGAGGTTCCT  467
             | ||||||| ||||| ||||||| |||||||||||||||||| |||||||||| ||||||
Sbjct  968   GCTGAAGAAGGATATTTAACTGGGAAGGAGATGTTTGAAATCAAAGGTTTTGAAGTTCCT  1027

Query  468   TCAAGTCAGGTTTTTTCTGTCAGCCAGCTTTTCATGAAACACCCAGACATTGCAAATGAT  527
             ||   ||||||| ||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct  1028  TCTTCTCAGGTTATTTCTGTGAGCCAGCTTTTCATGAAACACCCAGACATTGCAACTGGT  1087

Query  528   TTCAAACTAAATGGCAAAGGTCTGAAGACAGCATACATGAATATTGTCCTCAGCCTCATC  587
             |||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||
Sbjct  1088  TTCAAACTAAATGGCAAAGGTCTGAAGACAGCATACATGAGTCTTCTCCTCAGCCTCATC  1147

Query  588   GAGACATTGTGCAGGCCTCCACTTAGCTTTTCTGAGTCT-GAGCTAAGCAACATTGACAG  646
             ||||| ||| | ||||||||||| ||||||||||| | | ||| |||||||   | ||||
Sbjct  1148  GAGACGTTGCGAAGGCCTCCACTGAGCTTTTCTGA-TATTGAGTTAAGCAAGGCTAACAG  1206

Query  647   CGA-GTTGAGCGAGCTAATAGAAGCGGGATTTAAGCTGGATTGGTTAAAGACAAAGCTTG  705
             | | |||||| ||||| | ||||||||| |||||||||||||||||||||| ||||||||
Sbjct  1207  C-ACGTTGAGGGAGCTGACAGAAGCGGGCTTTAAGCTGGATTGGTTAAAGAAAAAGCTTG  1265

Query  706   AGGAGGTTTCCTTGGAGAGGAAGAAAGCAATTGCTGATAAT-CTCGGAGTCCAAGAATTG  764
             |||||||||||||| |||||||||| ||| | | ||||  | ||||  ||| || || ||
Sbjct  1266  AGGAGGTTTCCTTGAAGAGGAAGAATGCAGTAGATGATGGTTCTCGT-GTCAAACAAGTG  1324

Query  765   GAGGAACGCGTCAAGAATA-TGGAGCT-GAGTTTGTCGGATCTCAAAGTTGA  814
             ||||||||| |||| |||  || || | ||  |||||||| ||||||| |||
Sbjct  1325  GAGGAACGCATCAA-AATTCTGAAGGTTGACATTGTCGGAACTCAAAGATGA  1375


> AT2G42480.1 | Symbols:  | TRAF-like family protein | chr2:17685805-17689928 
REVERSE LENGTH=2309
Length=2309

 Score = 97.1 bits (52),  Expect = 3e-19
 Identities = 110/137 (80%), Gaps = 8/137 (6%)
 Strand=Plus/Plus

Query  693   AAGACAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAAGCA-AT--TGCTGATAA-TCT  748
             ||| ||||||||||||||||||||||||||||||||||| || |   |||| |||  |||
Sbjct  2121  AAGTCAAAGCTTGAGGAGGTTTCCTTGGAGAGGAAGAAATCAGACGATGCTTATAGGTCT  2180

Query  749   CGGAGTCCAAGAATTGGAGGAACGCGTCAAGAATATGGAGCTGA-GTTTGTCGGATCTCA  807
             ||| ||| |  || | |||||| || |||||||  | ||||||| | | || |||| |||
Sbjct  2181  CGG-GTCTACCAACTCGAGGAATGCTTCAAGAACCTTGAGCTGATGGT-GTTGGATTTCA  2238

Query  808   AAGTTGAACTTGA-AAG  823
             |||||||||| || |||
Sbjct  2239  AAGTTGAACTGGACAAG  2255



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44206049360


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5