BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924973

Length=364
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60783.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   433    7e-121


> AT1G60783.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; BEST Arabidopsis 
thaliana protein match is: unknown protein (TAIR:AT1G10690.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: 
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; 
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: 
NCBI BLink). | chr1:22374909-22375846 FORWARD LENGTH=938
Length=938

 Score =  433 bits (234),  Expect = 7e-121
 Identities = 312/350 (89%), Gaps = 3/350 (1%)
 Strand=Plus/Plus

Query  1    TTAACTTCATACGATAACTTATGGGAGTTTCCGGCAAGACTCACCACCAGTTTGATGGAA  60
            |||||||||||||||||||||||||| |||||||||||||| |||||||||||||  |||
Sbjct  245  TTAACTTCATACGATAACTTATGGGATTTTCCGGCAAGACTTACCACCAGTTTGACAGAA  304

Query  61   AATTTGGCGAAACTGTCGAAGGAAAGAAATGGGTCATCACAGGAATCTCCTTACGTTCTC  120
            ||||| ||||||||  |||||| |||||||| |||||||| ||||||||||||| |||| 
Sbjct  305  AATTTAGCGAAACTACCGAAGGGAAGAAATGCGTCATCACCGGAATCTCCTTACATTCTA  364

Query  121  CGAAGAAGCCGATTAGCTTCCCCTCCTCAGCCGTAGCTGACACGGAAGACGAAGATCTTT  180
            ||  ||||||||||||| || | ||||| |||||| |  ||||||||||||||||||| |
Sbjct  365  CGGTGAAGCCGATTAGCCTCTCTTCCTCTGCCGTATCCAACACGGAAGACGAAGATCTCT  424

Query  181  GTCCAACGACTCCAACGGCTGCTTCCGTTAGAATACCGACGGTGTTTCCATGTCCTCCGG  240
            |||||||||||||||| || | |||||||||||||||||||||  |||| ||||||||||
Sbjct  425  GTCCAACGACTCCAACAGCGGATTCCGTTAGAATACCGACGGTAATTCCGTGTCCTCCGG  484

Query  241  CGCCTAAGAAACGGAAACCGTCATTGAAGTTTAGCTATGACGGCGCTAGAGAGTTCTTTT  300
            |||||||||||||||||| | |||||||| |||||  | ||||| |||||||||||||||
Sbjct  485  CGCCTAAGAAACGGAAACTGACATTGAAGGTTAGC--T-ACGGCCCTAGAGAGTTCTTTT  541

Query  301  CTCCACCAGATCTCGAGACCGTCTTCATATACAGAACTACTTAATTCTGA  350
            | |||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct  542  CGCCACCAGATCTCGAGACCGTCTTCATATACAGAACTACTTGATTTTGA  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17091034660


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5