BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924977
Length=532
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60760.1 | Symbols: | Plant invertase/pectin methylesterase... 749 0.0
> AT1G60760.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr1:22365832-22366323 FORWARD
LENGTH=492
Length=492
Score = 749 bits (405), Expect = 0.0
Identities = 466/495 (94%), Gaps = 6/495 (1%)
Strand=Plus/Plus
Query 21 ATGGCGAGCCGCAACACAATCCAGATGTACCTCACGACTGTCGTCGCAATCGTGATCCTC 80
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCGAGTCGCAACACAATCCAGATGTACCTCACGACTGTTGTCGCAATCGTGATCCTC 60
Query 81 CTAGCGGCAAGCCAAGCCACGGAAGCGCGTTTCACGAGCCTATGTGCTCAAACCGCATAC 140
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 61 CTGGCGGCAAGCCAAGCCACGGAAGCTCGTTTCACGAGCCTATGCGCTCAAACCGCATAC 120
Query 141 CCAACCTTGTGTCGACCGCTGGTGAAAGGGCCAAACCCGAGACGAGCCACACACAACACG 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CCAACCTTGTGTCGACCGCTGGTGAAAGGGCCAAACCCGAGACGAGCCACACACAGCACG 180
Query 201 ATTCGAGCCTTGGAGGCTAAGACGAAATTGGCCATTACAG-CTTCTGCGAGATTCAAAAA 259
|| ||||||||||||||||||||||||||||| ||||||| || ||||||||||||| |
Sbjct 181 ATCCGAGCCTTGGAGGCTAAGACGAAATTGGCAATTACAGACT-CTGCGAGATTCAAGAG 239
Query 260 CGGAAATCCAACTGTTGCAATTTGCTATGCGACTCTTGTGGATGCATCCTTCAATCTTGA 319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 240 CGGAAATCCAACTGTTGCAATTTGCTATGCGACTCTTGTGGATGCATCCTTCAATCTT-A 298
Query 320 GAACG-CAAGGAAGAGCATAAGGAAGAGAAATGTTTTG-TCGCTAAAAATGTATTTGACC 377
| | | |||||| ||||| ||||| ||||||||| || | ||||||||||| |||||||
Sbjct 299 GGAGGGCAAGGACTAGCATTAGGAAAAGAAATGTTATGAT-GCTAAAAATGTTTTTGACC 357
Query 378 GCGGCTGTATCAGATTACGGTGTTTGTGTCAACGGGTTCATAGATTCACATCAAGTCAAC 437
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCGGCTGTGTCAGATTATGGTGTTTGTGTCAACGGGTTCATAGATTCACATCAAGTCAAC 417
Query 438 ACCCTTCAGAACGCTGTAGATGAGCTCAGGAAGATGGGAACTAACTGTTTGTTGCTTGCT 497
|| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 418 ACTCTTCAGAACGATGTAGATGAGCTCAGGAAGATGGGAACTAACTGCTTGTTGCTTGCT 477
Query 498 ACATTGATAAGATGA 512
|||||||||||||||
Sbjct 478 ACATTGATAAGATGA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25468712529
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5