BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924982
Length=1822
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60700.1 | Symbols: | SMAD/FHA domain-containing protein |... 1587 0.0
> AT1G60700.1 | Symbols: | SMAD/FHA domain-containing protein
| chr1:22351832-22354472 REVERSE LENGTH=1882
Length=1882
Score = 1587 bits (859), Expect = 0.0
Identities = 1003/1075 (93%), Gaps = 0/1075 (0%)
Strand=Plus/Plus
Query 735 AAAGAAGATTCAGAAATCCCATGCAATTTTGATATCTTCAAGAATGATGGCGACAAATCA 794
||||||||||||| ||||| |||||| |||||| ||||||||||||||||||||||||
Sbjct 611 AAAGAAGATTCAGGTGTCCCAAGCAATTCTGATATTTTCAAGAATGATGGCGACAAATCA 670
Query 795 TCTGCAAATGAAGTTAGATGTGGAGATGTTGTCAACATGCAGGGGTCTATGGAGATAATG 854
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 671 TCTGCAATTGAAGTTAGATGTGGAGATGAAATCAACATGCAGGGGTCTATGGAGATAATG 730
Query 855 TGCATTAATGATGAGCTTACACTGTGGAATAAAGACGATGAACCAATACCGATCAGCATT 914
||||| |||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 731 TGCATCAATGATGATCATAGACTGTGGAATAAAGACGATGAACCAATACCGATCAGCATT 790
Query 915 GTTCCTCCTGATGGTTGGGAAAGCGCATTGCTAGAAACATGTTCACTTCATCAGATCGAC 974
||||||||| |||| || |||||| |||||||||||| ||||||| |||||||||||||
Sbjct 791 GTTCCTCCTAATGGCTGCGAAAGCTTATTGCTAGAAACGTGTTCACGTCATCAGATCGAC 850
Query 975 AGATGTATAAATGAATACAATGTTCGTGATGATAACATTGGTCTTGAAATCTCTCCAATA 1034
|||||||||||||||||||| |||| ||| ||||| ||||||||||||||||||||||||
Sbjct 851 AGATGTATAAATGAATACAACGTTCATGAGGATAATATTGGTCTTGAAATCTCTCCAATA 910
Query 1035 CCTTTAACAAAAACTCTTGAAAGACCTAGTAGGCCATGGTCAGTTTGTGGCTCTATAGCT 1094
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 911 CCTTTAACAAAAACTCTTGAAAGACCTAGAAGGCCATGGTCAGTTTGTTGCTCTATAGCT 970
Query 1095 GCAGTCAGAAACTTACCTCTAATGGAAGATAGCTCAGGTGCTTGTAGTTCTTCGGATGAA 1154
||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 971 GCACTCAGAAACTTACCTCTAATGGAAGATAGCTCAGGTGCTTGTACTTCTTTGGATGAA 1030
Query 1155 CAAGTATATGCAAATGCTAATAGCTCTGAGGACAGGGACGCAGAACTTGCTCAAACCCCA 1214
||| ||||||||||||||| || ||||||||| ||||||||||||||| ||||| |||||
Sbjct 1031 CAATTATATGCAAATGCTACTACCTCTGAGGATAGGGACGCAGAACTTTCTCAACCCCCA 1090
Query 1215 TCAACTCTATATCAGGAAGAAGTGGATGGAGAAGATGAAATTGACATTGATGCAATGATC 1274
||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 1091 TCAACTCTATATCAGGAAGAAGTGGATGGTGAAGAAGAGATTGACATTGATGCAATGATC 1150
Query 1275 CGCAAATTGAATCTAGTCCCAGATGATTCAGATTCATGCTTCAACAGGGAAGAATGGAAC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CGCAAATTGAATCTAGTCCCAGATGATTCAGATTCATGCTTCAACAGGGAAGAATGGAAC 1210
Query 1335 ATATATAAGCACCCAAGACATGCCTTAATTGGATTGGAACACTGCACAAGAACTTCATTG 1394
|| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 1211 ATGTCTAAGCACCCAAGACATGCATTAATTGGATTGGAACAATGCACAAGAACTTCAATG 1270
Query 1395 CAAAGAGCAAATATGTTTCATGGGGCAATTGCCATCCTGCATTGTCGTGATTCAAAGCAT 1454
|||||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1271 CAAAGAGCAATTATGTTTCATGGGGCAATTGCCGTCCTGCATTGTCCTGATTCAAAGCAT 1330
Query 1455 TTTGTCAGAAAACGCGAGGTAATTATTGGGAGATCATCTGATGGCCTGAATGTTGACATT 1514
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1331 TTTGTCAGAAAACGCGAGGTAATTATTGGGAGATCATCTGGTGGCCTGAATGTTGACATT 1390
Query 1515 GACTTGAGTAAATATAACTATGGAAGCAAGATATCTCGGCGTCAGGCATTGGTTAAGCTA 1574
|||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1391 GACTTGGGTAAATATAATTATGGGAGCAAGATATCTCGGCGTCAGGCATTGGTTAAGCTA 1450
Query 1575 GAGAACAACGAATCATTCTCTCTAAAGAACCTTGGAAAGCGACATATTCTTGTAAATGGA 1634
|||||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1451 GAGAACTACGGATCATTCTCTCTAAAGAACCTTGGAAAGCAACATATCCTTGTAAATGGC 1510
Query 1635 GAAAAACTCGATACAGGACAGATTGCAACCCTCACATCGTGTAGTTCAATCGATATTAGA 1694
| ||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1511 GGAAAACTCGATAGAGGCCAGATTGTAACCCTCACATCGTGTAGTTCAATCAATATTAGA 1570
Query 1695 GGAGTAACCTTTGTGTTCAAGATTAACAAAGAAGCCGTGAGACAATTCTTGGAGAACAAC 1754
||| ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||
Sbjct 1571 GGAATAACCTTTGTGTTCAAGATTAACAAAGAAGCAGTGGGACAATTCTTGAAGAACAAC 1630
Query 1755 ACACGAAGAAAGACCGAGGAAGACACCAAATTCAGATGGTGCGAATAGATTCTGT 1809
||||| || |||| |||||| |||| |||||||||||||| |||||||||||||
Sbjct 1631 ACACGGAGGAAGAGCGAGGACGACAATAAATTCAGATGGTGTGAATAGATTCTGT 1685
Score = 625 bits (338), Expect = 5e-178
Identities = 437/484 (90%), Gaps = 9/484 (2%)
Strand=Plus/Plus
Query 27 GAAGGTCTTCGAGAATCTGAGCATCTCTTCGTCAATAAGGACCTCGTCGATGATTATGTC 86
||||||||||||| ||||||||||||||||||||||||||| ||| ||| || | |||||
Sbjct 107 GAAGGTCTTCGAGTATCTGAGCATCTCTTCGTCAATAAGGATCTCTTCGGTGGTGATGTC 166
Query 87 GAAATTTCCGGTAAAGATGATACATCAGAAAGTTCCAATGTCAAAAGGAAAGTTGAAACT 146
||||||| ||| |||| ||||||||||| |||||||||||||||||||||||||||| |
Sbjct 167 AAAATTTCTGGTGAAGAAGATACATCAGAGAGTTCCAATGTCAAAAGGAAAGTTGAAAGT 226
Query 147 CTCTTCTGTGTTATGAGAAAGAGAACTTGTAGGCACAACTCTGTCGATGATGATGATATG 206
|| |||| ||| |||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 227 CTATTCTCTGTCATGAGAAAGAGAACATGTAGGCACAAGTCTGT---TGATGATGATATG 283
Query 207 TTTCCGGATTTAGATAATAATGCAGAGAAAGGTGGTGGTGATGAGGATATACGAAATTGT 266
|||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||
Sbjct 284 TTTCCGGATTTAGATAATAATGCAGATATTGGTGATGGTGATGAGGATATACGAAATTGT 343
Query 267 CTGAGACCTGAAAGTGACTTCTGGTTTGAAAATCTTATGGATAATCCTTACGATCCAT-T 325
||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||| | |
Sbjct 344 CTGAGACCTGAAAGTGATTTCTGGTTTAAAAATCTTATGGATAATCCTTATGATCC-TCT 402
Query 326 GGATGAAGGTACCATTGTAGACGACA-GTGGCAGTGACACAAACATATCTGAATCTTCAG 384
|||||| ||| | |||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 403 GGATGAGGGTTCAATTGTAGACG-CAAGTGGCAGTGACACAGACATATCTGAATCTTCAG 461
Query 385 AATTTGATGTTATATCGGAACATGTTC-TAGAAGAAAATGATTTGGTAACGGGATCGAAA 443
| |||||||||||||| || ||||||| | ||||| ||||||||| |||| |||||||||
Sbjct 462 AGTTTGATGTTATATCAGAGCATGTTCCT-GAAGACAATGATTTGATAACCGGATCGAAA 520
Query 444 TCTTTGGCTATATGGTCCAGTGAGGATAAGGGAACTCTGGTTAGTAAGTGGTCTTTAGAA 503
|||||| |||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 521 TCTTTGTCTATATGGTCCAGTGAGGATGATGGAACTCTGGTTAGTAAGTGGTCTTCAGAA 580
Query 504 ACTC 507
||||
Sbjct 581 ACTC 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90160178820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5