BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924984
Length=535
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60690.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 183 1e-45
AT1G60680.1 | Symbols: | NAD(P)-linked oxidoreductase superfam... 132 4e-30
AT1G60710.1 | Symbols: ATB2 | NAD(P)-linked oxidoreductase supe... 102 3e-21
AT1G60730.3 | Symbols: | NAD(P)-linked oxidoreductase superfam... 93.5 2e-18
> AT1G60690.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22349892-22351668 REVERSE LENGTH=1038
Length=1038
Score = 183 bits (99), Expect = 1e-45
Identities = 111/117 (95%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 399 TCTGAGCTCGAGACCATTTCCCAACCAGAGTCTGTGAAAGGAGAAAGATACATGGCCACA 458
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 922 TCTGAGCTTGAGACCATTGCCCAACCAGAGTCTGTGAAAGGAGAAAGATACATGGCCACA 981
Query 459 GTGCCAACCTTCAAGAACTCCGACACACCACCGTTGTGTTCTTGGAATGCTGTGTAA 515
|||||||||||||| ||||||||||| ||||| |||| |||||||||||||||||||
Sbjct 982 GTGCCAACCTTCAAAAACTCCGACACTCCACCATTGTCTTCTTGGAATGCTGTGTAA 1038
> AT1G60680.1 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22347622-22349297 REVERSE LENGTH=1304
Length=1304
Score = 132 bits (71), Expect = 4e-30
Identities = 117/139 (84%), Gaps = 4/139 (3%)
Strand=Plus/Plus
Query 399 TCTGAGCTCGAGACCATTTCCCAACCAGAGTCTGTGAAAGGAGAAAGATACATGGCCACA 458
||||||||||| || || || ||||||||||||||||||||||||||||||||||| ||
Sbjct 986 TCTGAGCTCGACTCCCTTGCCAAACCAGAGTCTGTGAAAGGAGAAAGATACATGGCCTCA 1045
Query 459 GTG-CCAACCTTCAAGAACTCCGACACACCACCGTTGTGTTCTTGGAATGCTG-TGTAAA 516
|| ||| |||||||||||||| |||| |||||||||| ||| ||||| || | ||||
Sbjct 1046 ATGTCCA-CCTTCAAGAACTCCAACACTCCACCGTTGTCTTCCTGGAAAGCCACT-TAAA 1103
Query 517 ACTGTTTGTGAGTTTCTCT 535
|| | || ||||||||||
Sbjct 1104 ACCGCATGAGAGTTTCTCT 1122
> AT1G60710.1 | Symbols: ATB2 | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22354753-22356761 REVERSE LENGTH=1492
Length=1492
Score = 102 bits (55), Expect = 3e-21
Identities = 128/160 (80%), Gaps = 17/160 (11%)
Strand=Plus/Plus
Query 20 CATGGC--AA-CTTGCGGAATGAGGAGGATAAAGCTGGGAAGCCAAGGCCTTGAGGTATC 76
|||||| || |||||||| |||| ||||| |||||||||||||||||||||||||||||
Sbjct 134 CATGGCGGAAGCTTGCGGAGTGAGAAGGATGAAGCTGGGAAGCCAAGGCCTTGAGGTATC 193
Query 77 GGCGCAAGGCTTTGGTTGC--G--C-TCAC---T----ACGGTCCTTCAAAGCCGGAAAC 124
||||||||| |||||||| | | || | | ||||| || | ||||||||||
Sbjct 194 TGCGCAAGGCCTTGGTTGCATGGGCCTCTCCGCTTTCTACGGTGCTCCCAAGCCGGAAAA 253
Query 125 TGAAAACATTGCTCTCCTCCATCACGCTATT-ATCTCCGG 163
|||| ||| |||||| |||| ||||||||| | ||||||
Sbjct 254 TGAAGCCATCGCTCTCATCCACCACGCTATTCA-CTCCGG 292
> AT1G60730.3 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr1:22358231-22360184 REVERSE LENGTH=1296
Length=1296
Score = 93.5 bits (50), Expect = 2e-18
Identities = 71/80 (89%), Gaps = 5/80 (6%)
Strand=Plus/Plus
Query 20 CATGGC--AA-CTTGCGGAATGAGGAGGATAAAGCTGGGAAGCCAAGGCCTTGAGGTATC 76
|||||| || |||||||| |||| ||||| ||||| |||||||||||||||||||||||
Sbjct 102 CATGGCGGAAGCTTGCGGAGTGAGAAGGATTAAGCTAGGAAGCCAAGGCCTTGAGGTATC 161
Query 77 GGCGCAAGG-CTTTGGTTGC 95
||||||||| ||| ||||||
Sbjct 162 GGCGCAAGGTCTT-GGTTGC 180
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25619414970
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5