BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924987
Length=805
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60670.2 | Symbols: | Protein of unknown function (DUF3755)... 1319 0.0
> AT1G60670.2 | Symbols: | Protein of unknown function (DUF3755)
| chr1:22343655-22347624 FORWARD LENGTH=1569
Length=1569
Score = 1319 bits (714), Expect = 0.0
Identities = 768/795 (97%), Gaps = 0/795 (0%)
Strand=Plus/Plus
Query 11 CTTTCGAGTGATGATTCCGATGGATAATTATTGCGTACCGAGCACTAGCACGACCGGTTT 70
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 311 CTTTTGAGTGATGATTCCGATGGATAATTATTGCGTACCGAGTACTAGCACGACCGGTTT 370
Query 71 AGTATTTTCGGCGAATTCGAGCATGAATGCTTCCTCTGGATTTCACCTTACTGTAAATTC 130
||| |||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 371 AGTGTTTTCGGCGACTTCGAGCATGAATGCTTCTTCTGGATTTCATCTTACTGTAAATTC 430
Query 131 TCCGACTTCGGTTACTGGACTCAAACATGAAGCTTCTTTGGCTGTTGATTGGTCTGTTGA 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 TCCGACTTCGGTTACTGGACTCAAACATGAAGCTTCTTTGGCTGTTGATTGGTCTGTTGA 490
Query 191 GGAACAGTATGTATTGGAGAAAGGTCTTGCAAAATTTAAAGATGAACCACAAGTTACGAA 250
|||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 491 GGAACAATATATATTGGAGAAAGGTCTTTCAAAATTTAAAGATGAACCACAAGTTACAAA 550
Query 251 GTATGTAAAGATCGCAGCAACTCTACCAGATAAAAGTGTACGGGATGTAGCAATGAGATG 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 GTATGTAAAGATCGCAGCAACTCTACCAGATAAAAGTGTACGGGATGTAGCAATGAGATG 610
Query 311 TAAATGGATGACGCAAAAACGAAGAAAAGGGGAAGAACATAGTACTGGCACGAAGGTTAG 370
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 611 TAAATGGATGACGCAAAAGCGAAGAAAAGGGGAAGAACATAGTACTGGCACGAAGGTTAG 670
Query 371 TTATAGAAAGGTGGTGGATTTACCCCCAAAACTGAACATGTTCTCAACTTTGCCACAACA 430
|||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 671 TTATAGAAAGGTAGTGGATTTACCCCCAAAACTGAACATGTTCTCAACTGAGCCACAACA 730
Query 431 AAATGCTACATATGCCATAAACCATATGTGCCAGAGTGCACGCATGCCTTTTGAAGGTCT 490
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 731 AAATGCTACATATGCCATGAACCATATGTGCCAGAGTGCACGCATGCCTTTTGAAGGTCT 790
Query 491 AAGTGATGCGGTTATGGAGCGTCTAAGGCAGAATGCTCAAGCTTTCAGCCAAATTTCTTC 550
||||||||||||||||||||||||| |||||||||||||||||||||| ||||| || ||
Sbjct 791 AAGTGATGCGGTTATGGAGCGTCTACGGCAGAATGCTCAAGCTTTCAGTCAAATCTCCTC 850
Query 551 AAACCTTTCTGTGTGCAAGCCACAGGATAACGTCAGTCTGTTTTATATGGCAAGAAATAA 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 AAACCTTTCTGTGTGCAAGCCACAGGATAACGTCAGTCTGTTTTATATGGCAAGAAATAA 910
Query 611 CATCAGTGCCATCTTGAATGACATGAAGGAGATGCCTGGTATCATCAGCCGGATGCCGCC 670
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 911 CATCAGTGCCATCTTGAATGACATGAAGGAGATGCCTGGGATCATCAGCCGGATGCCGCC 970
Query 671 TCTGCCTGTCTCAATTAACAATGATCTTGCAAGCAGTTTAATGACGAGTACAACACAGCC 730
|||||||||||||||||||||||||||||||||||||||| |||| ||| | ||||||||
Sbjct 971 TCTGCCTGTCTCAATTAACAATGATCTTGCAAGCAGTTTAGTGACAAGTGCCACACAGCC 1030
Query 731 AAGATCTTATAGCATTCCCTCAAGCATCTATCTGAAGCAGGAGCCAAGAAACTGATGGGG 790
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1031 GAGATCTTATACCATTCCCTCGAGCATCTATCTGAAGCAGGAGCCAAGAAACTGATGGGG 1090
Query 791 GAGGAAACTGGATTT 805
|||||||||||||||
Sbjct 1091 GAGGAAACTGGATTT 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39182634660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5