BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg924988

Length=409
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60660.1 | Symbols: B5 #5, ATCB5LP, CB5LP | cytochrome B5-li...   562    9e-160


> AT1G60660.1 | Symbols: B5 #5, ATCB5LP, CB5LP | cytochrome B5-like 
protein | chr1:22342414-22343014 REVERSE LENGTH=601
Length=601

 Score =  562 bits (304),  Expect = 9e-160
 Identities = 360/386 (93%), Gaps = 8/386 (2%)
 Strand=Plus/Plus

Query  6    TTCCAAGTACAGAAAGATGATAGCTGTGATCGGATTGCTTCTGGGTTTTCTAGTTTCAGC  65
            ||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  45   TTCCAAGGAGAGAAAGATGATAGCTGTGATCGGATTGCTTCTGGGTTTTCTAGTATCAGC  104

Query  66   ATTGTTCTTAATCCAAGGCAAGCGAAGAAGATCAAACGACAATCAAGAGAAGAAGAGGTC  125
            |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct  105  ATTGTTCTTAATCCAAGGAAAGCGAAGAAGAACAAACGACAATCAAGAGAAGAAGAGATC  164

Query  126  TAGTAACGAGCCTGT---AGA---GGTAAGACCAAAAAGTTACAGCAAGAGTGAAGTCGC  179
            ||| |  ||||||||   |||   ||||||||||||||||||||||||||||||||||||
Sbjct  165  TAGCAGTGAGCCTGTAGAAGATGTGGTAAGACCAAAAAGTTACAGCAAGAGTGAAGTCGC  224

Query  180  AGTACATAACAAAAGGAACGATTGTTGGGTCATAATCAAAGATAGAGTCTATGATGTTAC  239
            |||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct  225  AGTACATAACAAAAGGAACGATTGTTGGATCATAATCAAAGATAAAGTCTATGATATTAC  284

Query  240  TTCTTATGTTGAAGAACATCCTGGTGGCGACGCCATTCTAGATCATGCTGGTGATGATTC  299
            ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct  285  TTCTTATGTTGAAGAACATCCTGGTGGTGACGCTATTCTTGATCATGCTGGTGATGATTC  344

Query  300  TACTGATGGCTTCTTCGGACCACAACACGCCACTCGTGTTTTCGACATGATTGAGGATTT  359
            ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct  345  TACTGATGGCTTCTTCGGACCTCAACACGCCACTCGTGTTTTCGACATGATTGAAGATTT  404

Query  360  CTACATCGGAGAACTTC-TTAAGTAA  384
            ||||||||| ||||||| ||| ||||
Sbjct  405  CTACATCGGGGAACTTCATTA-GTAA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19353083365


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5