BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924991
Length=1967
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60630.1 | Symbols: | Leucine-rich repeat protein kinase fa... 2968 0.0
> AT1G60630.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr1:22334662-22336908 REVERSE LENGTH=2174
Length=2174
Score = 2968 bits (1607), Expect = 0.0
Identities = 1856/1976 (94%), Gaps = 18/1976 (1%)
Strand=Plus/Plus
Query 1 TCTTCTTGTATGTTCTTCTTGATGTTTGCTTTCTTTTTTATTTCTCTGGTGAGATC-AGA 59
||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||| ||
Sbjct 136 TCTTCTTGTATGTTCTTCTTGGTGTTTGCTTTCTTTTTGATTTCTCCGGTGAGATCAAG- 194
Query 60 CGATGTAGAAGCTCTACTGAGTTTGAAATCATCCATTGATCCTTCAAACTCGATTCCATG 119
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 195 CGATGTTGAAGCTCTACTGAGTTTGAAATCATCCATTGATCCTTCAAATTCGATTCCATG 254
Query 120 GCGAGGAACAGATCTTTGCAACTGGGAAGGAGTTAAGAAATGTATCAATGGAAGAGTCTC 179
|||||||||||||| |||||||||||||||||| |||||||| || || |||||||||||
Sbjct 255 GCGAGGAACAGATCCTTGCAACTGGGAAGGAGTCAAGAAATGCATGAAAGGAAGAGTCTC 314
Query 180 AAAGCTTGTTCTTGAGAATCTGAACCTCACTGGCTCACTCAACAACAAGAGCTTGAACCA 239
||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||||||
Sbjct 315 AAAGCTTGTTCTTGAGAATTTGAACCTCAGTGGCTCACTCAACGGCAAGAGTTTGAACCA 374
Query 240 ATTGGATCAACTTAGAGTACTTAGTTTCAAAGGCAACTCTCTCTTTGGCTCAATCCCTAA 299
|||||||||||||||||| |||||||||||||| |||||||||| |||||||||||||||
Sbjct 375 ATTGGATCAACTTAGAGTTCTTAGTTTCAAAGGAAACTCTCTCTCTGGCTCAATCCCTAA 434
Query 300 CCTCTCCT-GTTTGGTTAACCTCAAATCTCTTTATCTCAATGATAATAACTTCTCCGGTG 358
||| | || |||| || ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 435 CCTAT-CTGGTTTAGTCAACCTCAAATCTCTTTATCTCAACGATAATAACTTCTCCGGTG 493
Query 359 AGTTTCCTGAATCACTCACGTCTCTGCACCGATTGAAAACCGTTGTTCTTTCC-GGAAAT 417
|||| ||||||||||| |||||||| |||||||||||||| |||||||||||| || |||
Sbjct 494 AGTTCCCTGAATCACTGACGTCTCTACACCGATTGAAAACGGTTGTTCTTTCCAGG-AAT 552
Query 418 CGGTTTTCGGGAAAGATCCCTACCTCGTTGCTCCGTCTTTCCCGCCTTTACATGCTTTAC 477
|||||||| || ||||| |||| |||||||||||| || ||||||||||||| | |||||
Sbjct 553 CGGTTTTCCGGCAAGATTCCTAGCTCGTTGCTCCGACTCTCCCGCCTTTACACGTTTTAC 612
Query 478 GTTGAAGACAATCTCTTCTCTGGTTCCATTCCTCCTCTTAACCAAGCAACTCTCAGATTC 537
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 613 GTTCAAGACAATCTCTTCTCTGGTTCCATTCCTCCTCTCAACCAAGCAACTCTCAGATTC 672
Query 538 TTTAATGTCTCAAATAATCAGCTCTCTGGCCATATCCCACTTACACAAGCTTTGAATCGG 597
||||||||||| |||||||| |||||||| |||||||||| ||||||||| ||||||||
Sbjct 673 TTTAATGTCTCGAATAATCAACTCTCTGGTCATATCCCACCAACACAAGCTCTGAATCGG 732
Query 598 TTCAATGAGTCGTCGTTTACCAG-TAACATTGCTCTCTGCGGTGATCAGATTCAAAACTC 656
||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||
Sbjct 733 TTCAATGAGTCGTCGTTTA-CTGACAACATTGCTCTCTGCGGTGATCAGATTCAAAACTC 791
Query 657 ATGCAATGACACCACCGGAATCACTTCAACTCCATCAGCAAAACCAGCAATTCCC-GTAG 715
||||||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 792 ATGCAATGACACCACTGGAATCACTTCAACTCCATCAGCAAAACCAGCTA-TCCCTGTAG 850
Query 716 CCAAAACGCGTAACAGAAAAAAGCTCATCGGAATCATTTCCGGAAGCATTTGTGGCGGAA 775
||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CCAAAACACGTAGCAGAACGAAGCTCATCGGAATCATTTCCGGAAGCATTTGTGGCGGAA 910
Query 776 T-TGTGATACTTTTGCTGACATTGCTTCTCATATGT-TTGCTTTGGAGACGGAAACGAAT 833
| | |||||||| |||||||||| |||||||||||| || |||||||||||||| ||||
Sbjct 911 TAT-TGATACTTCTGCTGACATTTCTTCTCATATGTCTT-CTTTGGAGACGGAAGCGAAG 968
Query 834 CAAATCCAAGAGAGAAGAGAGGAGAAGCAAAGC-CGTGGCAGAGTCAGAAGGAGCAAAGA 892
||||||||| ||||||||||||||||||||| | ||||||||||||| ||| ||||||||
Sbjct 969 CAAATCCAAAAGAGAAGAGAGGAGAAGCAAA-CGCGTGGCAGAGTCAAAAGAAGCAAAGA 1027
Query 893 CGGCTGAAACAGAGGAAGGTATC-AATGACGAGAAAAACAAAAGGTTCTCATGGGAGAAA 951
||||||||||||||||||||| | | |||| ||||||||||||||||||| |||||||||
Sbjct 1028 CGGCTGAAACAGAGGAAGGTA-CGAGTGACCAGAAAAACAAAAGGTTCTCTTGGGAGAAA 1086
Query 952 GAAAGTGAAGAAGGATCAGTGGGGACTCTGGTTTTCTTGGGAAGAGACATCACGGTGATG 1011
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1087 GAAAGCGAAGAAGGATCAGTAGGGACTCTGGTTTTCTTGGGAAGAGACATCACGGTGGTG 1146
Query 1012 AAATACACCATGGATGATCTACTCAAAGCTTCAGCGGAAACGTTGGGAAGAGGAACGTTA 1071
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1147 AGATACACCATGGATGATCTACTCAAAGCTTCAGCAGAAACGTTGGGAAGAGGAACGTTA 1206
Query 1072 GGGAGCACTTACAAGGCGGTGATGGAGTCTGGATTCATCATCACTGTTAAGAGGCTTAAA 1131
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1207 GGGAGCACTTACAAGGCAGTGATGGAGTCTGGATTCATCATCACTGTTAAGAGGCTCAAG 1266
Query 1132 GACACGGGGTTTCCTCGAATGGATGAATTCAAGAGACACATTGAGATCCTTGGAAGGCTC 1191
||| | |||||||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 1267 GACGCAGGGTTTCCTCGAATGGATGAATTCAAGAGACATATTGAGATCCTTGGCAGACTC 1326
Query 1192 ACGCACCCTAATCTTGTGCCTCTCAGAGCTTATTTCCAAGCCAAAGAAGAGTGTTTGCTC 1251
| |||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 1327 AAGCACCCTAATCTGGTGCCACTCAGAGCTTATTTCCAAGCCAAAGAAGAATGCTTGCTC 1386
Query 1252 GTCTACGATTACTTCCCCAATGGAAGTCTCTTCTCTCTTATCCATGGAAGTAAAGTTTCC 1311
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1387 GTCTACGATTACTTCCCCAATGGAAGTCTCTTCTCTCTTATCCATGGAAGTAAGGTCTCT 1446
Query 1312 GGGAGTGGGAAGCCTCTTCACTGGACATCATGTCTGAAAATAGCAGAGGACTTGGCAATG 1371
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1447 GGGAGTGGGAAGCCTCTTCACTGGACATCATGTTTGAAAATAGCAGAGGACTTGGCAATG 1506
Query 1372 GGCCTGGTCTACATTCATCAGAATCCTGGCTTAACGCATGGGAACTTGAAATCCTCCAAT 1431
|| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1507 GGTCTGGTCTACATTCATCAGAATCCTGGCTTAACGCATGGGAACTTGAAATCATCTAAT 1566
Query 1432 GTTTTGTTAGGTCCGGACTTCGAGTCCTGTCTCACGGACTACGGTCTCAGCGATCTCCAT 1491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1567 GTTTTGTTAGGTCCGGACTTCGAGTCCTGTCTCACGGACTACGGTCTCAGCGATCTCCAT 1626
Query 1492 GATCCTTACTCGATTGAAGACACAAGTGCAGCCTCCCTCTTTTACAAAGCTCCTGAATGC 1551
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1627 GATCCTTACTCGATTGAAGACACAAGTGCAGCTTCTCTCTTTTACAAAGCTCCTGAATGC 1686
Query 1552 AGAGACTTACGGAAAGCCTCAACACAACCCGCTGATGTTTATAGCTTTGGAGTCCTCCTT 1611
||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1687 AGAGACTTACGCAAGGCTTCAACACAACCAGCTGATGTTTATAGCTTTGGAGTCCTCCTT 1746
Query 1612 CTAGAGCTTCTAACAGGTAGAACTTCATTCAAGGACCTTGTTCATAAAAACGGGTCAGAT 1671
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 1747 CTAGAGCTTCTAACAGGTAGAACTTCATTCAAGGACCTTGTTCATAAATACGGGTCTGAT 1806
Query 1672 ATCTCCACATGGGTGCGTGCGGTGAGAGAGGAAGAGACTGAATTAAGTGAGGAGATGAGT 1731
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
Sbjct 1807 ATCTCCACATGGGTGCGTGCGGTGAGAGAGGAAGAGACTGAAGTAAGTGAGGAGCTGAAT 1866
Query 1732 CCTTCTGAGGAGAAACTTCAGGCTCTTTTGAGCATCGCGACAGCTTGCGTGGCTGTTAAG 1791
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1867 GCTTCTGAGGAGAAACTTCAAGCTCTTTTGACCATCGCGACAGCTTGCGTGGCTGTTAAG 1926
Query 1792 CCGGAAAACCGTCCTGCGATGAGAGAGGTATTGAAGATGGTGAAAGATGCAAGGGCTGAA 1851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1927 CCGGAAAACCGTCCTGCGATGAGAGAGGTATTGAAGATGGTGAAAGATGCAAGGGCTGAA 1986
Query 1852 GCAGCTCTGTTCTCATTTAACAGCAGTGATCATTCGCCTGGGAGATGGTCGGATACGATT 1911
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1987 GCAGCTCTTTTCTCATTTAACAGCAGTGATCATTCGCCTGGGAGATGGTCGGATACGATT 2046
Query 1912 CAGAGCTTGCCAAGGGAGGATCATATGAGCATCTGATTCAAGTTGTTGCAGCCTTC 1967
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 2047 CAGAGCTTGCCAAGGGAGGATCATATGAGCATCTGATTCAAGTTGTTGTAGCTTTC 2102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97439257845
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5