BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg924992
Length=288
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60815.1 | Symbols: RALFL7 | RALF-like 7 | chr1:22392729-223... 261 3e-69
> AT1G60815.1 | Symbols: RALFL7 | RALF-like 7 | chr1:22392729-22392974
FORWARD LENGTH=246
Length=246
Score = 261 bits (141), Expect = 3e-69
Identities = 203/233 (87%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 21 ATGGCTGCACACAAAATGAGTC-TAACCAGTCTTTTCTTTGTTTCAATAATGATTATATT 79
||| |||||| ||||| || || || ||| | |||||||||||||||||||||||||| |
Sbjct 1 ATGTCTGCACGCAAAAAGAATCGTATCCA-TGTTTTCTTTGTTTCAATAATGATTATAAT 59
Query 80 ATCATTGTTCAGCCGATTTGGAGAAGGAAGCAAATATATAAACTATGGAGATATGAGAAA 139
||||||| ||||| ||||||||||||||| ||| | ||||||||| |||| ||| |||
Sbjct 60 ATCATTGGTCAGCGGATTTGGAGAAGGAATAAAACAGATAAACTATAAAGATTTGATAAA 119
Query 140 AGACATAATTCCAGCTTGTGGC-AGTAAGAACCCCAAAGAATGTGTCAAAGTTCCAGCCA 198
||||| |||||||| ||| | ||||||||||| |||||||| ||||||||||||||||
Sbjct 120 AGACACAATTCCAGGTTG-CACTAGTAAGAACCCTAAAGAATGCGTCAAAGTTCCAGCCA 178
Query 199 ACCCTTACCATCGTGGTTGTGAAATTTCTACACATTGTCATCGTGAACAACAT 251
|| |||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 179 ACACTTACCATCGTGGTTGTGAAATTTCTACACGTTGTCATCGTGAACAGCAT 231
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13270685736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5