BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925000

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G19650.1 | Symbols:  | cyclin-related | chr3:6823508-6825261...   161    2e-39


> AT3G19650.1 | Symbols:  | cyclin-related | chr3:6823508-6825261 
FORWARD LENGTH=1031
Length=1031

 Score =  161 bits (87),  Expect = 2e-39
 Identities = 99/105 (94%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  58   GAGAGGATCGTGGAGAAGTTCAAGAGATAAGAGTAACCAAAGAGGTGGAGATGATGACAA  117
            |||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| ||
Sbjct  401  GAGAGGATCGTGGAGAAGTTCAAGAGATCAGAGTAACCGAAGAGCTGGAGATGATGAGAA  460

Query  118  ATCACAGCATCGTAAAGACGAAGACAAAAGCTCGTGGCGACATGA  162
             |||||||||||||||||||||||||||||||| |||||||||||
Sbjct  461  GTCACAGCATCGTAAAGACGAAGACAAAAGCTCATGGCGACATGA  505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9104544531


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5