BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925001
Length=964
Score E
Sequences producing significant alignments: (Bits) Value
AT5G37240.1 | Symbols: | unknown protein; Has 0 Blast hits to ... 84.2 2e-15
> AT5G37240.1 | Symbols: | unknown protein; Has 0 Blast hits to
0 proteins in 0 species (source: NCBI BLink). | chr5:14737560-14739256
REVERSE LENGTH=477
Length=477
Score = 84.2 bits (45), Expect = 2e-15
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 88 TAAGGAGAATGGATTCTTATGCTGCAGAGGCAAATCATTGGGGAGACGATTGGGTAGCCA 147
||| |||||||||||||||| || |||| ||| ||| ||||||||||||||||||||||
Sbjct 165 TAATGAGAATGGATTCTTATACTATAGAGACAACTCACTGGGGAGACGATTGGGTAGCCA 224
Query 148 AGAGAA 153
||||||
Sbjct 225 AGAGAA 230
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47169864033
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5