BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925006 Length=1369 Score E Sequences producing significant alignments: (Bits) Value AT1G60520.1 | Symbols: | pseudogene, putative interferon-induc... 270 2e-71 > AT1G60520.1 | Symbols: | pseudogene, putative interferon-induced GTP-binding protein mx, blastp match of 52% identity and 3.4e-13 P-value to GP|28475259|emb|CAD67756.1||AJ544824 MxB protein {Danio rerio} | chr1:22297973-22298736 FORWARD LENGTH=764 Length=764 Score = 270 bits (146), Expect = 2e-71 Identities = 202/229 (88%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 498 GGATCTGTTAAAGGCGTCTCAGACACTCCTTTGACCCTCCATGTGAAGAAGGATGGTGTT 557 ||||||| |||||| || ||| ||||||| || || |||||||| ||||||| || |||| Sbjct 372 GGATCTGGTAAAGGTGTATCATACACTCCCTTAACTCTCCATGTCAAGAAGGCTGATGTT 431 Query 558 CCCGATCTGACATTGGTTGATCTCCCTGGGATAACTCGAGTTTCCGTGAATGGACAGCCT 617 || ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| || Sbjct 432 CCTGATCTTACATTGGTTGATCTCCCTGAGATAACTCGAGTTCCCGTGAATGGACAGACT 491 Query 618 CGAACCATCTATGAG-CAGATCTCC-AGGATGATTATGAAGTACATCAAGCCAGAAGAAT 675 | || |||| ||| | | |||||| ||| ||||||||||||||||||||||| | |||| Sbjct 492 CAAAACATCCATGCGAAAAATCTCCAAGG-TGATTATGAAGTACATCAAGCCACATGAAT 550 Query 676 CCATCATCCTCAATGTTCTGCCAGCAACAGTTGATTTCACAACTTGTGA 724 ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 551 CCATCATCCTCAATGTTCTGCCAGCGACAGTTGATTTCACAACTTGTGA 599 Score = 222 bits (120), Expect = 6e-57 Identities = 151/166 (91%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 751 ACAAAACAGGGGAACGAACTCTGGCTGTGGTCACAAAGGTTGACATGGCTCCTGAAGGTG 810 |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| | Sbjct 600 ACAAAACAGGGGAACGGACTCTGGCTGTGGTCACAAAGGTTGACATGGCTACTGAAGG-G 658 Query 811 -TCCTGGAGAAAGTAACTGCAGATGAGGTGAGTATTGGACTTGGTTATGTCTGTGTTAGA 869 || || ||||||| |||||||||||||||||||| ||| |||||||||| ||||||||| Sbjct 659 CTCGTGAAGAAAGTTACTGCAGATGAGGTGAGTATCGGAATTGGTTATGTATGTGTTAGA 718 Query 870 AACAGGATTGGGGAGGAAACCTTTGAAGAAGCTCGAAGGGAAGAAG 915 ||| |||| |||||||||| ||||||||||||||| | |||||||| Sbjct 719 AACCGGATAGGGGAGGAAATCTTTGAAGAAGCTCGTATGGAAGAAG 764 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67419331935 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5