BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925006

Length=1369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60520.1 | Symbols:  | pseudogene, putative interferon-induc...   270    2e-71


> AT1G60520.1 | Symbols:  | pseudogene, putative interferon-induced 
GTP-binding protein mx, blastp match of 52% identity and 
3.4e-13 P-value to GP|28475259|emb|CAD67756.1||AJ544824 MxB 
protein {Danio rerio} | chr1:22297973-22298736 FORWARD LENGTH=764
Length=764

 Score =  270 bits (146),  Expect = 2e-71
 Identities = 202/229 (88%), Gaps = 3/229 (1%)
 Strand=Plus/Plus

Query  498  GGATCTGTTAAAGGCGTCTCAGACACTCCTTTGACCCTCCATGTGAAGAAGGATGGTGTT  557
            ||||||| |||||| || ||| ||||||| || || |||||||| ||||||| || ||||
Sbjct  372  GGATCTGGTAAAGGTGTATCATACACTCCCTTAACTCTCCATGTCAAGAAGGCTGATGTT  431

Query  558  CCCGATCTGACATTGGTTGATCTCCCTGGGATAACTCGAGTTTCCGTGAATGGACAGCCT  617
            || ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||| ||
Sbjct  432  CCTGATCTTACATTGGTTGATCTCCCTGAGATAACTCGAGTTCCCGTGAATGGACAGACT  491

Query  618  CGAACCATCTATGAG-CAGATCTCC-AGGATGATTATGAAGTACATCAAGCCAGAAGAAT  675
            | || |||| ||| |  | |||||| ||| ||||||||||||||||||||||| | ||||
Sbjct  492  CAAAACATCCATGCGAAAAATCTCCAAGG-TGATTATGAAGTACATCAAGCCACATGAAT  550

Query  676  CCATCATCCTCAATGTTCTGCCAGCAACAGTTGATTTCACAACTTGTGA  724
            ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  551  CCATCATCCTCAATGTTCTGCCAGCGACAGTTGATTTCACAACTTGTGA  599


 Score =  222 bits (120),  Expect = 6e-57
 Identities = 151/166 (91%), Gaps = 2/166 (1%)
 Strand=Plus/Plus

Query  751  ACAAAACAGGGGAACGAACTCTGGCTGTGGTCACAAAGGTTGACATGGCTCCTGAAGGTG  810
            |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
Sbjct  600  ACAAAACAGGGGAACGGACTCTGGCTGTGGTCACAAAGGTTGACATGGCTACTGAAGG-G  658

Query  811  -TCCTGGAGAAAGTAACTGCAGATGAGGTGAGTATTGGACTTGGTTATGTCTGTGTTAGA  869
             || || ||||||| |||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct  659  CTCGTGAAGAAAGTTACTGCAGATGAGGTGAGTATCGGAATTGGTTATGTATGTGTTAGA  718

Query  870  AACAGGATTGGGGAGGAAACCTTTGAAGAAGCTCGAAGGGAAGAAG  915
            ||| |||| |||||||||| ||||||||||||||| | ||||||||
Sbjct  719  AACCGGATAGGGGAGGAAATCTTTGAAGAAGCTCGTATGGAAGAAG  764



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67419331935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5