BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925011

Length=417
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G22794.2 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   172    2e-42
  AT1G49940.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   159    1e-38


> AT5G22794.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
cellular_component unknown; BEST Arabidopsis thaliana protein 
match is: Tetratricopeptide repeat (TPR)-like superfamily 
protein (TAIR:AT1G04770.1); Has 146 Blast hits to 146 proteins 
in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi 
- 0; Plants - 146; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr5:7608242-7611591 FORWARD LENGTH=714
Length=714

 Score =  172 bits (93),  Expect = 2e-42
 Identities = 137/158 (87%), Gaps = 4/158 (3%)
 Strand=Plus/Plus

Query  20   AGAAATGTGGAACTACAAAAGAGCAAGTTTAGCTATTGAAGC-A-AATTTTGGAT--TAT  75
            ||||| ||||||  ||| ||||||||||| |||| ||||||| | || |||||||  |||
Sbjct  254  AGAAAGGTGGAAGAACAGAAGAGCAAGTTGAGCTCTTGAAGCTACAACTTTGGATGATAT  313

Query  76   ATCAGGGAGAAGCATTCAATGGAAAACCAACAAACACTACGAGATCTCATGGAAGGAAAT  135
            |||| | |||||||||||||||||||||| |||| | | |||||||||||||  ||||||
Sbjct  314  ATCAAGAAGAAGCATTCAATGGAAAACCAGCAAAAATTGCGAGATCTCATGGCCGGAAAT  373

Query  136  TTCAGGTCACGGTCGAGAAGGAAACATCTAGGATCTTG  173
            ||||||||||||||||||||||||| |||||||| |||
Sbjct  374  TTCAGGTCACGGTCGAGAAGGAAACCTCTAGGATGTTG  411


> AT1G49940.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Tetratricopeptide repeat (TPR)-like superfamily protein 
(TAIR:AT1G04770.1); Has 40 Blast hits to 40 proteins in 
9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; 
Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI 
BLink). | chr1:18488517-18491179 REVERSE LENGTH=994
Length=994

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 130/151 (86%), Gaps = 4/151 (3%)
 Strand=Plus/Plus

Query  26   GTGGAACTACAAAAGAGCAAGTTTAGCTATTGAAGC-AAATTTTGGAT--TATATCAGGG  82
            ||||||  || |||||||||||| |||| || |||| ||| |||||||  ||||||| | 
Sbjct  112  GTGGAAGAACTAAAGAGCAAGTTGAGCTCTTAAAGCTAAACTTTGGATGATATATCAAGA  171

Query  83   AGAAGCATTCAATGGAAAACCAACAAACACTACGAGATCTCATGGAAGGAAATTTCAGGT  142
            |||||||||||||||||||||| |||| | | |||||||||||||  | |||||||||||
Sbjct  172  AGAAGCATTCAATGGAAAACCAGCAAAGATTGCGAGATCTCATGGCCG-AAATTTCAGGT  230

Query  143  CACGGTCGAGAAGGAAACATCTAGGATCTTG  173
            |||||||||||||||||| |||||||| |||
Sbjct  231  CACGGTCGAGAAGGAAACCTCTAGGATATTG  261



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19755225357


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5