BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925013

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G60480.1 | Symbols:  | pseudogene, putative ADP-ribosylation...   200    9e-51
  AT1G10630.1 | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation fact...   159    1e-38
  AT1G70490.1 | Symbols: ATARFA1D, ARFA1D | Ras-related small GTP...   145    4e-34
  AT1G23490.1 | Symbols: ATARFA1A, ATARF1, ATARF, ARF1 | ADP-ribo...   141    5e-33


> AT1G60480.1 | Symbols:  | pseudogene, putative ADP-ribosylation 
factor, similar to ADP-ribosylation factor GI:166586 from 
(Arabidopsis thaliana); blastp match of 100% identity and 7.4e-53 
P-value to GP|17154685|emb|CAD12855.1||AJ421017 ADP-ribosylation 
factor {Gossypium hirsutum} | chr1:22284122-22285076 
REVERSE LENGTH=955
Length=955

 Score =  200 bits (108),  Expect = 9e-51
 Identities = 110/111 (99%), Gaps = 0/111 (0%)
 Strand=Plus/Plus

Query  236  TGATGCAGTACTGCTTGTGTTTGCCAACAAACAGGATCTTCCAAACGCAATGAATGCTGC  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  421  TGATGCAGTACTGCTTGTGTTTGCCAACAAACAGGATCTTCCAAACGCAATGAATGCTGC  480

Query  296  TGAAATAACTGATAAGCTTGGACTCCACTCTCTCCGGCAACGTCACTGGTA  346
            ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  481  TGAAATAACTGATAAGCTTGGACTCCACTCTCTCCGGCAGCGTCACTGGTA  531


 Score =  169 bits (91),  Expect = 2e-41
 Identities = 115/125 (92%), Gaps = 8/125 (6%)
 Strand=Plus/Plus

Query  24   GGCTTTTTGCCAAGAAGGAGATGCGCATCCTTATGGTTGGTTGGTCTTGATGCTGCTGGT  83
            ||||||| ||||||||||||||||||||||||||||| ||  | ||||||||||||||||
Sbjct  32   GGCTTTTCGCCAAGAAGGAGATGCGCATCCTTATGGT-GG--G-TCTTGATGCTGCTGGT  87

Query  84   AAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATCGATTGTCACCACCATCCCCAC  143
            ||||||||||||||||||||||||||||| ||||||||   | |||||||||||||||||
Sbjct  88   AAGACCACCATTTTGTACAAGCTCAAGCTTGGTGAGAT---T-GTCACCACCATCCCCAC  143

Query  144  CATTG  148
            |||||
Sbjct  144  CATTG  148


 Score =  100 bits (54),  Expect = 9e-21
 Identities = 56/57 (98%), Gaps = 0/57 (0%)
 Strand=Plus/Plus

Query  359  GTACGAAGGTCTGGACTGGCTCTCCAACAACATTGCTAACAAAGTAAGCACATTCTA  415
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  663  GTACGAAGGCCTGGACTGGCTCTCCAACAACATTGCTAACAAAGTAAGCACATTCTA  719


> AT1G10630.1 | Symbols: ATARFA1F, ARFA1F | ADP-ribosylation factor 
A1F | chr1:3512795-3514729 REVERSE LENGTH=1043
Length=1043

 Score =  159 bits (86),  Expect = 1e-38
 Identities = 112/123 (91%), Gaps = 8/123 (7%)
 Strand=Plus/Plus

Query  24   GGCTTTTTGCCAAGAAGGAGATGCGCATCCTTATGGTTGGTTGGTCTTGATGCTGCTGGT  83
            ||||||||||||||||||||||||| |||||||    |||||||||||||||||||||||
Sbjct  135  GGCTTTTTGCCAAGAAGGAGATGCGAATCCTTA----TGGTTGGTCTTGATGCTGCTGGT  190

Query  84   AAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATCGATTGTCACCACCATCCCCAC  143
            ||||||||||||||||||||||||||||| ||||||||   | ||||||||||| |||||
Sbjct  191  AAGACCACCATTTTGTACAAGCTCAAGCTTGGTGAGAT---T-GTCACCACCATTCCCAC  246

Query  144  CAT  146
            |||
Sbjct  247  CAT  249


> AT1G70490.1 | Symbols: ATARFA1D, ARFA1D | Ras-related small GTP-binding 
family protein | chr1:26563924-26565810 REVERSE LENGTH=918
Length=918

 Score =  145 bits (78),  Expect = 4e-34
 Identities = 115/131 (88%), Gaps = 9/131 (7%)
 Strand=Plus/Plus

Query  24   GGCTTTTTGCCAAGAAGGAGATGCGCATCCTTATGGTTGGTTGGTCTTGATGCTGCTGGT  83
            ||||||||||||||||||||||||| |   || | | |||||||||||||||||||||||
Sbjct  166  GGCTTTTTGCCAAGAAGGAGATGCG-A--ATTCT-GATGGTTGGTCTTGATGCTGCTGGT  221

Query  84   AAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATCGATTGTCACCACCATCCCCAC  143
            |||||||| || ||||||||||||||||||||  |||  |||||||||||||||||| ||
Sbjct  222  AAGACCACAATCTTGTACAAGCTCAAGCTCGG--AGA--GATTGTCACCACCATCCCTAC  277

Query  144  CATTG-TTTCA  153
             |||| |||||
Sbjct  278  TATTGGTTTCA  288


 Score =  134 bits (72),  Expect = 9e-31
 Identities = 106/123 (86%), Gaps = 0/123 (0%)
 Strand=Plus/Plus

Query  236  TGATGCAGTACTGCTTGTGTTTGCCAACAAACAGGATCTTCCAAACGCAATGAATGCTGC  295
            |||||| ||  ||||||||||||||||||| || ||||||||||| || ||||| |||||
Sbjct  485  TGATGCTGTGTTGCTTGTGTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAACGCTGC  544

Query  296  TGAAATAACTGATAAGCTTGGACTCCACTCTCTCCGGCAACGTCACTGGTACATCCAGAG  355
            |||||| || ||||||||||| || ||||| ||||| || ||||| ||||| ||||||||
Sbjct  545  TGAAATCACAGATAAGCTTGGCCTTCACTCCCTCCGTCAGCGTCATTGGTATATCCAGAG  604

Query  356  CAC  358
            |||
Sbjct  605  CAC  607


> AT1G23490.1 | Symbols: ATARFA1A, ATARF1, ATARF, ARF1 | ADP-ribosylation 
factor 1 | chr1:8336683-8338672 FORWARD LENGTH=982
Length=982

 Score =  141 bits (76),  Expect = 5e-33
 Identities = 110/125 (88%), Gaps = 8/125 (6%)
 Strand=Plus/Plus

Query  24   GGCTTTTTGCCAAGAAGGAGATGCGCATCCTTATGGTTGGTTGGTCTTGATGCTGCTGGT  83
            ||||||||||||||||||||||| | |   || | | |||||||||||||||||||||||
Sbjct  169  GGCTTTTTGCCAAGAAGGAGATGAG-A--ATTCT-GATGGTTGGTCTTGATGCTGCTGGT  224

Query  84   AAGACCACCATTTTGTACAAGCTCAAGCTCGGTGAGATCGATTGTCACCACCATCCCCAC  143
            ||||||||||||||||||||||||||||||||  |||  |||||| |||||||| |||||
Sbjct  225  AAGACCACCATTTTGTACAAGCTCAAGCTCGG--AGA--GATTGTAACCACCATTCCCAC  280

Query  144  CATTG  148
             ||||
Sbjct  281  TATTG  285



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5