BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925016
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
AT3G25260.1 | Symbols: | Major facilitator superfamily protein... 560 1e-158
> AT3G25260.1 | Symbols: | Major facilitator superfamily protein
| chr3:9199438-9202000 FORWARD LENGTH=1940
Length=1940
Score = 560 bits (303), Expect = 1e-158
Identities = 1085/1446 (75%), Gaps = 120/1446 (8%)
Strand=Plus/Plus
Query 37 TGGAAGAAAAATTT-ATAGATTGGAGAGG-AAGAGATACAATCCCTGGCAAACATGGTGG 94
||||||| || ||| | |||||||||||| || ||| |||| ||||||||||||||||
Sbjct 170 TGGAAGAGAAGTTTGA-AGATTGGAGAGGCAA-AGAGGCAATTTCTGGCAAACATGGTGG 227
Query 95 GATTAGAGCTGC-TTCTATTGCTTATGTTGTGGAG-CTACTGGAG-ATCATGGTGTCCAT 151
||||| |||||| ||| ||||||| |||||| ||| | | ||||| || ||||||| | |
Sbjct 228 GATTAAAGCTGCTTTC-ATTGCTTGTGTTGTAGAGACGA-TGGAGAAT-ATGGTGTTCTT 284
Query 152 AGCTAT-TGGAAACAACATGGTGTTATA-TTTCATGAAATCAATGCATTACTCACCAGCC 209
||| || | || |||| | || | || ||| | |||||||||| |||||||| || ||
Sbjct 285 AGC-ATGTTCAACCAACTTCATGATGTACTTT-ACGAAATCAATGAATTACTCAACACCC 342
Query 210 AAAGCAGCAAACATGGTGACCAATTTCATTGGAACATC-TTATTTGCTCACTCTCTTT-G 267
|||||||||| ||||||||| |||||| | || ||||| || |||||||||| | ||| |
Sbjct 343 AAAGCAGCAACCATGGTGACTAATTTCGTAGGGACATCGTT-TTTGCTCACTAT-TTTCG 400
Query 268 GTGGTTTCGT-GACTGACTC-GTTCGTCACTCGCTCCACAACTTTCATCATCTTCT-GTT 324
||||||| || | | ||||| ||| ||||||||| | | ||||| || |||| | |||
Sbjct 401 GTGGTTTTGTCG-CGGACTCTTTTC-TCACTCGCTTCGCTGCTTTCGTCCTCTT-TGGTT 457
Query 325 CCATTGAAATATTGGGTTTGCTTGTGTTGACATTTCAAGCTCATTA-CCCTAA-TCTACA 382
|||||||| | |||||||| | |||||||| | |||||||| || | |||| | ||||
Sbjct 458 CCATTGAACTCCTGGGTTTGATCATGTTGACACTCCAAGCTCA-TATCACTAAGT-TACA 515
Query 383 ACCTGAGGGAAATAATACACCATCAACTCTTCAATCAACGGTTCTTTTCACGGGACTTTA 442
|||| | ||| ||| | ||| || |||| ||||||||||||||| ||||| ||||||||
Sbjct 516 ACCTCAAGGAGGTAAAAAACCTTCGACTCCTCAATCAACGGTTCTATTCACTGGACTTTA 575
Query 443 TTTGTTCGCCT-TTGGTACGGGCGGT-ACTAGGCCCTCGTTGCTTGCACACGGAGGTGAT 500
| | | || ||||| || ||| | ||| ||||||| ||| || ||||| ||
Sbjct 576 TGCAATAG-CTATTGGTGTTGGAGGTGTCAAGG-GGTCGTTGCCTGCTCATGGAGGCGAC 633
Query 501 CAGTTTGATAGTAGACACCAAAGAG-AGATCTCGA-AATTCTTCAATTGGTACTACTTCT 558
||| | | || |||| |||| || | |||||| | ||||||||||||||| | |||||
Sbjct 634 CAGATCGGTACTAGAAACCAGAG-GCTGATCTC-AGGATTCTTCAATTGGTATTTCTTCT 691
Query 559 TTGTCTGCTTTGGATGG-CTCATGGCTA-TAAC-CGTTATGGCTTGGAT---------CA 606
||||||| ||||| || || |||| | |||| | |||||| |||||| ||
Sbjct 692 CTGTCTGCCTTGGA-GGTTTCTTGGC-AGTAACAC-TTATGGTTTGGATCGAGGAGAACA 748
Query 607 -A--A--GAGCT----TTTCAATATATCAATTGTGCTTCTAGCGAT-TGCG--CTAT-GT 653
| | ||||| |||| |||||| | | | || |||| | |||| || | ||
Sbjct 749 TAGGATGGAGCTCCAGCTTCACTATATCTACCGCGGTTTTAGC-CTCTGCGATCT-TCGT 806
Query 654 ATTT--TTGCACTAGGATTACCTTTGTATCGATTGAAACGTCCTAG-TGGAAGTCCCTTG 710
||| ||| | |||| || |||||||||| || || || || || ||||| |||
Sbjct 807 -TTTCGTTG--C-GGGATGCCCGATGTATCGATTCAAGCG-CCCAGCAGGGAGTCCTTTG 861
Query 711 ACAAGGATTGCAAATGTGTTTATTTCTGCCGCAAGGTATCGCAAT-GGTTCTGTTTTGGA 769
|| || |||| ||||||||| ||||||||||||| | || ||| |||| ||| |||
Sbjct 862 ACCAGAATTGTGAATGTGTTTGTTTCTGCCGCAAGAAACCGAAATAGGTT-TGTAACGGA 920
Query 770 TGTAGAGATGATG-CAAAGCCTCA-CA-TTTACTGACAACAA-TATTCATCACCACAACA 825
|| |||| || || || || ||| | | ||| ||||| || |||||| |||||||
Sbjct 921 TGCAGAGGTGGTGACACAGAATCATAACTCTACCGACAA-AAGCATTCAT---CACAACA 976
Query 826 AGTTAAAGTGTTTAG-ATAAAGCATTGTTGAACAAAAACATCTCAGCAACACAAGTCGAA 884
|||| |||| ||| | |||||||| | | ||||| || || |||||||||||||| |||
Sbjct 977 AGTTCAAGT-TTTTGAATAAAGCAAAGCTCAACAACAAGATATCAGCAACACAAGTTGAA 1035
Query 885 GAAACAAGAACATTTATCGGTCTCCTACCAATCTTTTTTAGCACGATTGTCATGAA-TAC 943
||||||||||| ||| | | |||||| ||||| ||| ||||| ||| | ||||| |
Sbjct 1036 GAAACAAGAACGTTTCTAGCTCTCCTTCCAATATTTGGGAGCACAATTATAATGAACT-G 1094
Query 944 TTGTGTGGCACAATTACTG-ACCTTCACCGTACAACAAGGCATGACCATGAGCAGAAAAA 1002
|||||| |||||| | | |||||| |||| |||||||||||| | | |||||||
Sbjct 1095 TTGTGTCGCACAAAT-GGGAACCTTCTCCGTTCAACAAGGCATGGTGACAAACAGAAAAC 1153
Query 1003 TCTCTTC-TTCAATGGAGATTCCCGTACCTTCCCTCAATGTCA-T-CTCAATCATCTTCA 1059
|||| | ||| | ||||| ||||| |||||||||||| || | ||| | | | | ||
Sbjct 1154 TCTC-GCGTTCCTTTGAGATCCCCGTGGCTTCCCTCAATGCCATTCCTCTA-C-TGTGCA 1210
Query 1060 TTCTCGCTTTC-ATATCCTTATATGAACTCTTCGGGAAAA-G----TAT-C-A-A-C--- 1106
| ||| | ||| || | ||||| || || ||||| |||| | ||| | | | |
Sbjct 1211 TGCTCTC-TTCTTTAGCTTTATACGAGCTTTTCGGCAAAAGGATCTTATCCAATAGCGAA 1269
Query 1107 AGAACATCAAGCTTCTCTTTGAAACGAATTGGACT-CGGCTTGA-CCCTCTCCTCTATTT 1164
||| | || |||||| ||||||||| || ||| | ||| || | | ||| |||||||||
Sbjct 1270 AGATCGTCCAGCTTCAATTTGAAACGTATAGGA-TACGG-TTTAGCTCTCACCTCTATTT 1327
Query 1165 CAATGGCGGTTGCAGCCATTGTTGAGGCCAAGAGGAAACACGAGGCGGTTCAAAATGACG 1224
||||||||||||||||||| || |||| ||| || ||||| || |||||||| || ||
Sbjct 1328 CAATGGCGGTTGCAGCCATCGTGGAGGTCAAAAGAAAACATGAAGCGGTTCACAACAACA 1387
Query 1225 TTA-GAATATCTGTTTTCTGGCTA-ATGTTTCAGTATCTCATGCTAAGTTTCTCGGATAT 1282
| | || | ||||| ||||||||| | | |||| | | | ||| | ||| ||||||||||
Sbjct 1388 TCAAGATT-TCTGTGTTCTGGCTAGA-GCTTCAATTTGTTATGTTGAGTCTCTCGGATAT 1445
Query 1283 ATTGACC-TTGGGAGGGATGCAAGAGTTTTTCTATAGAGAAGCTCCAGCGAGTATGAAGA 1341
||||| |||| ||| ||| |||||| |||| ||||||| ||||||||||||||| ||
Sbjct 1446 GTTGACTGTTGG-AGGAATGTTAGAGTTCTTCTTTAGAGAATCTCCAGCGAGTATGAGGA 1504
Query 1342 GCATGAGCATAGCATTGGGGTGGTGCTCCATTGCAATGGGTTTTTTCCTTAGCTCACTTC 1401
||||||||| || || ||||||||||||| ||||||||||| ||||| ||||| |||
Sbjct 1505 GCATGAGCACCGCGTTAGGGTGGTGCTCCACCGCAATGGGTTTCTTCCTCAGCTCGGTTC 1564
Query 1402 TTGTGG 1407
||||||
Sbjct 1565 TTGTGG 1570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78112048020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5