BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925019
Length=565
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60430.1 | Symbols: ARPC3 | actin-related protein C3 | chr1:... 876 0.0
> AT1G60430.1 | Symbols: ARPC3 | actin-related protein C3 | chr1:22264385-22266002
REVERSE LENGTH=1052
Length=1052
Score = 876 bits (474), Expect = 0.0
Identities = 529/556 (95%), Gaps = 2/556 (0%)
Strand=Plus/Plus
Query 9 ATTGGGCACAAAATGGTTTATCACTCGAGCTTTGTGGATGAAGAAGGGA-TAACAAAGGC 67
||| ||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||
Sbjct 226 ATTCGGCACAAAATGGTTTATCACTCGAGTTTTGTGGATGAAGAA-GGAGTAACAAAGGC 284
Query 68 ATGTGGTTGTCCATTGCTTCCTCTCAAGAGTCATATAAAAGGTCCTGCACCTGTTTCAGA 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ATGTGGTTGTCCATTGCTTCCTCTCAAGAGTCATATAAAAGGTCCTGCACCTGTTTCAGA 344
Query 128 ACAAGATAAAACTGATATCGTGGACGAGGCGATCACCTTCTTTCGTGCTAATGTCTTCTT 187
|||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 345 ACAAGATAAAACTGATATAGTAGACGAGGCAATCACCTTCTTTCGTGCTAATGTCTTCTT 404
Query 188 CACAAACTTTGATATCAAAAGTCCTGCTGATAAGCTTCTTATTTACTTGACGTTTTACAT 247
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 405 CACAAACTTTGATATCAAAAGTCCTGCTGATAAGCTCCTTATTTACTTGACGTTTTATAT 464
Query 248 AAATGTGGCGTTAAAGAGGCTCGAAGGCTGTAGAACGTTGGCTGTTGGAACTAAGGCCAT 307
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || ||
Sbjct 465 AAATGTGGCGTTAAAGAGGCTTGAAGGCTGTAGAACATTGGCTGTTGGAACTAAAGCGAT 524
Query 308 TATCAACTTGGGTTTAGAAGATATTCCTGTTCCTGGAGAAACTGGCTTTCCTTTCCCAGG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 TATCAACTTGGGTTTAGAAGATATTCCTGTTCCTGGAGAAACTGGCTTTCCTTTCCCAGG 584
Query 368 CCTCTTTTCGCTTCCTCAGTCCCAGGAAGAAGCAGATCTTTTCAGGAACTATCTTAAGCA 427
|||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 585 TCTCTTTTCGCTTCCGCAGTCCCAGGACGAAGCAGAGCTTTTCAGGAACTATCTTAAGCA 644
Query 428 GGTTCGAGAGGAGACAAGTGGGAGGCTACTGAGTGTAGCGTATAGAGCCAACGGGACACC 487
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 645 GGTTCGAGAGGAGACAAGTGGGAGGTTACTGAGTGTAGCATATAGAGCCAACGGGACACC 704
Query 488 AAACAAATGGTGGCTTGCATTTGCCAAGCGGAAATTCATAAACGTTGTCGTCCTATGATA 547
||| ||||||||||||||||| |||||| |||||||||| ||||| ||||||||||||||
Sbjct 705 AAATAAATGGTGGCTTGCATTCGCCAAGAGGAAATTCATGAACGTGGTCGTCCTATGATA 764
Query 548 AAACACATTATCACTG 563
||||| | |||||||
Sbjct 765 AAACAGAGAATCACTG 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27126439380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5