BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925020
Length=1777
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60420.1 | Symbols: | DC1 domain-containing protein | chr1:... 2719 0.0
> AT1G60420.1 | Symbols: | DC1 domain-containing protein | chr1:22261888-22264408
FORWARD LENGTH=1992
Length=1992
Score = 2719 bits (1472), Expect = 0.0
Identities = 1676/1777 (94%), Gaps = 4/1777 (0%)
Strand=Plus/Plus
Query 1 ATTCGATTTCCGTACAAGCCATGGCCGAAACCTCGAAGGTAGTCAACGGTGGCGATTCCC 60
||||||| ||||||||| | |||||||||||||||||| ||||||||| | |||| |||
Sbjct 71 ATTCGATCTCCGTACAAACAATGGCCGAAACCTCGAAGCAAGTCAACGGCGACGATGCCC 130
Query 61 TGGATCTTCACTCACTTCTCTCTTCTTCGGCGAGGGATTTCCTCGTTCGTAATGACGGCG 120
|||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 131 AGGATCTTCACTCGCTTCTTTCTTCTCCGGCGAGGGATTTCCTCGTTCGTAATGACGGCG 190
Query 121 AACAGGTGAAAATTGACAGCTTGATAGGCAAGAAGATTGGGTTGTATTTTTCAGCTGCGT 180
||||||||||| ||||||||||| |||| ||||||||||| ||||||||||||||||| |
Sbjct 191 AACAGGTGAAAGTTGACAGCTTGTTAGGGAAGAAGATTGGATTGTATTTTTCAGCTGCTT 250
Query 181 GGTGTGGACCGTGTCAGCGGTTTACTCCACAGCTGGTGGAAGTTTACAACGAACTCTCTT 240
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 251 GGTGTGGACCGTGTCAGCGGTTTACTCCACAGCTGGTGGAAGTCTACAACGAGCTCTCTT 310
Query 241 CGAAAGTTGGTTTTGAGATTGTCTTTGTGTCGGGTGATGAGGATGAGGAGTCTTTTGGAG 300
|||||||||||||||||||||| |||||||| |||||||||||||| ||||| |||||||
Sbjct 311 CGAAAGTTGGTTTTGAGATTGTGTTTGTGTCAGGTGATGAGGATGAAGAGTCATTTGGAG 370
Query 301 ATTATTTCAGTAAGATGCCCTGGCTTGCTGTTCCGTTTACTGATTCTGAATCCCGTGACC 360
|||||||||| |||||||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 371 ATTATTTCAGAAAGATGCCCTGGCTCGCTGTTCCGTTTACTGATTCGGAAACCCGTGACC 430
Query 361 GTTTGGATGAGTTGTTTAAGGTTAGGGGAATACCTAACCTAGTGATGGTTGATGATCATG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 GTTTGGATGAGTTGTTTAAGGTTAGGGGAATACCTAACCTAGTGATGGTTGATGATCATG 490
Query 421 GTAAACTTGTGAATGAGAATGGGGTTGGGGTCATACGAAGCTATGGAGCTGATGCTTATC 480
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 491 GTAAACTTGTGAATGAGAATGGTGTTGGGGTCATACGAAGCTATGGAGCTGATGCTTATC 550
Query 481 CTTTCACACCGGAGAAAATGAAGGAGATCAAAGAGGACGAAGATAGAGCTCGGAGAGAAC 540
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 551 CTTTCACACCAGAGAAAATGAAGGAGATCAAAGAGGATGAAGATAGAGCTCGGAGAGGAC 610
Query 541 AGACCTTAAGATCCGTCTTGGTGACTCCTTCACGGGACTTTGTGATCTCGCCTGACGGAA 600
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 611 AGACCTTAAGATCTGTCTTGGTGACTCCTTCACGAGACTTTGTGATTTCGCCTGACGGAA 670
Query 601 ACAAGGTACCTGTATCAGAGCTTGAGGGAAAAACCATTGGCCTTCTCTTCTCGGTCGCCT 660
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 671 ACAAGGTACCCGTATCAGAGCTTGAGGGAAAAACCATTGGCCTTCTCTTCTCTGTGGCCT 730
Query 661 CTTACAGGAAATGCACAGAGTTTACTCCAAAGCTTGTTGAGTTTTATACGAAGTTGAAGG 720
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 731 CTTACAGGAAATGCACAGAGCTTACTCCAAAGCTTGTTGAGTTTTATACGAAGCTGAAGG 790
Query 721 AGAATAAGGAGGATTTTGAGATTGTGTTGATATCTCTTGATGATGATGAGGAGTCTTTTA 780
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 791 AGAATAAGGAGGATTTTGAGATTGTGTTGATATCTCTTGAAGATGATGAGGAGTCTTTTA 850
Query 781 ATCAGGAATTCAAGACCAAGCCATGGCTATCGTTGCCGTTCAACGACAAAAGCGCATCGA 840
|||| || ||||||||||||||||||||| | |||||||||||||||||||| | ||| |
Sbjct 851 ATCAAGACTTCAAGACCAAGCCATGGCTAGCATTGCCGTTCAACGACAAAAGTGGATCAA 910
Query 841 AATTGGCTCGGCACTTCATGCTGGCAACGCTACCGACGCTGGTTATTCTTGGGCCTGATG 900
||||||||||||| ||||||||| |||| |||||||| ||||| ||||| || |||||||
Sbjct 911 AATTGGCTCGGCATTTCATGCTGTCAACACTACCGACACTGGTCATTCTCGGCCCTGATG 970
Query 901 GAAAAACCCGTCACTCGAATGTCGCTGAAGCTATTGATGACTATGGAGTTCTTGCTTATC 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 971 GAAAAACCCGTCACTCGAATGTCGCTGAAGCTATTGATGACTATGGAGTTCTTGCGTATC 1030
Query 961 CTTTCACTCCTGAGAAGTTTGAAGAACTCAAGGAGATAGAAAAGGCAAAGGTAGAGGCTC 1020
|||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1031 CTTTCACTCCAGAGAAGTTTCAAGAACTCAAGGAGCTAGAAAAGGCAAAGGTAGAGGCTC 1090
Query 1021 AAACGCTCGAGTCACTTCTTGTCTCAGGTGATCTCAACTATGTTCTTGGAAAAGATGGGG 1080
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1091 AAACGCTCGAGTCACTTCTTGTCTCAGGTGATCTCAACTACGTTCTCGGAAAAGATGGGG 1150
Query 1081 CTAAGGTGCTTATTTCGGATCTGGTCGGGAAGAAC-ATTCTTATATACTTCTCAGCTCAC 1139
| ||||||||| ||||||||||||| ||||||| | |||||||| |||||||||||||||
Sbjct 1151 CAAAGGTGCTTGTTTCGGATCTGGTGGGGAAGA-CTATTCTTATGTACTTCTCAGCTCAC 1209
Query 1140 TGGTGTCCTCCTTGTCGCGCTTTTACACCAAAGCTTGTTGAAGTATACAAGCAGATAAAG 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1210 TGGTGTCCTCCTTGTCGCGCTTTTACACCAAAGCTTGTTGAAGTATACAAGCAGATAAAG 1269
Query 1200 GAGCGGGATGAAGCGTTTGAATTGATCTTCATCTCCAGTGACCGTGACCAGGAATCATTT 1259
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1270 GAGCGGAATGAAGCGTTTGAATTGATCTTCATCTCCAGTGACCGTGACCAGGAATCATTC 1329
Query 1260 GATGAGTACTACTCGCAAATGCCGTGGCTGGCTCTTCCATTTGGTGATTCTAGAAAAACA 1319
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 1330 GATGAGTACTATTCGCAAATGCCGTGGCTGGCTCTTCCATTTGGTGATCCTAGGAAAGCA 1389
Query 1320 TCCTTGGCACGAACCTTCAAGGTCGGTGGGATCCCAATGCTAGCAGCTCTGGGACCAACT 1379
||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1390 TCCTTGGCAAAAACCTTTAAGGTTGGTGGGATCCCAATGCTAGCAGCTCTGGGACCAACT 1449
Query 1380 GGGAAAACTGTAACAAAAGAAGCAAGGGACCTTGTGGTAGCCCATGGAGCCGAGGCTTAC 1439
||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1450 GGGCAAACCGTAACAAAAGAAGCAAGGGACCTTGTCGTAGCCCATGGAGCCGATGCTTAC 1509
Query 1440 CCTTTTACTGAGGAACGTTTGAAGGAGATTGAAGCTAAGTACGATGACATGGCAAAAGAG 1499
||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1510 CCTTTTACTGAGGAACGTTTGAAGGAGATTGAAGCTAAGTACGATGAGATAGCAAAAGAT 1569
Query 1500 TGGCCTAAGAAGGTGAAACATGTACTTCATGAAGAACATGAGCTAGAACTGACTCGTGTA 1559
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 1570 TGGCCTAAGAAGGTGAAACATGTTCTCCATGAAGAACATGAGCTAGAACTAACTCGTGTT 1629
Query 1560 CAGGTTTACACGTGCGATAAGTGCGAGGAAGAAGGGACAATATGGTCTTACCAGTGCGAC 1619
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1630 CAGGTTTACACATGCGATAAGTGTGAGGAAGAAGGGACAATATGGTCTTACCATTGCGAC 1689
Query 1620 GAATGCAACTTTGATCTTCACGCCAAGTGTGCTTTAAAGGAGGACACAAAAGCAAACGGC 1679
|||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 1690 GAATGCGACTTTGATCTTCACGCCAAGTGTGCTTTAAACGAGGACACAAAAGAAAACGGC 1749
Query 1680 GATGAGGCTGTGAAAGAAGGTGAC-AGCGAGTCCACAGATGGTTGGGTTTGTGACGGAGA 1738
|||||||||||||||| |||| | | |||||||| |||||||||||||||||| ||| |
Sbjct 1750 GATGAGGCTGTGAAAGTTGGTGGCGA-CGAGTCCAAAGATGGTTGGGTTTGTGAAGGAAA 1808
Query 1739 CGTATGCACCAAGGCCTGATAGGTAGCTTCAGGCACA 1775
|||||||||||||||||||||||||||||||||||||
Sbjct 1809 CGTATGCACCAAGGCCTGATAGGTAGCTTCAGGCACA 1845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87901154295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5