BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925023
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60400.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1260 0.0
> AT1G60400.1 | Symbols: | F-box/RNI-like superfamily protein
| chr1:22254405-22255798 FORWARD LENGTH=1212
Length=1212
Score = 1260 bits (682), Expect = 0.0
Identities = 1043/1215 (86%), Gaps = 34/1215 (3%)
Strand=Plus/Plus
Query 34 CAAAACCAAT-GGCTCGGGGATAGATAGGTTAAGCGATTTACCAGAGCATTTGTCGTGTC 92
||||| | || ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 18 CAAAAGC-ATAGGCTCGGGGATAGATAGGTTAAGCGCTTTACCAGAGCATTTGTTGTGTC 76
Query 93 GTATACTCTCTCACCTCTCCACCAAGGACTCGGTTCGTACGAGCGTTTTGTCTAAGCATT 152
||||||||||| | |||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 77 GTATACTCTCTGAACTCTCCACCAAGGATTCGGTTCGCACGAGTGTTTTGTCTAAGCATT 136
Query 153 GGAGAAACCTTTGGTTACATGTTCCTGCTTTGG-ATTTGAATACCATTGATTTTCCAGAT 211
||||||| ||||||||||||||||||| ||||| ||| ||| |||| |||||||||||||
Sbjct 137 GGAGAAATCTTTGGTTACATGTTCCTGTTTTGGAATTGGAA-ACCAGTGATTTTCCAGAT 195
Query 212 AATCTCGTCTTTAAGGAGTTCATTGATAGATTTGTCGAATTTGACAAAGAGTTAGACTTA 271
||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 196 AATCTGGTCTTTAGGGAGTTCATTGATAGATTTGTCGGATTTGACAAAGAGATAGACTTA 255
Query 272 AAGAGATTCGAGATATTTTATGATGTTAATCATGACCACTCTTTTGATGAGTTTCTGTGG 331
||||| ||||| ||||||||||||||| | ||| || || | |||||| |||||||||
Sbjct 256 AAGAGTTTCGATATATTTTATGATGTT-A--ATGTCCTCTGGTATGATGATTTTCTGTGG 312
Query 332 ATGATCGATGATGTGGTTAAGCGTAGAGTTTGTCG-TGTAACAGTTATCAATAACGTC-T 389
||||||||||||||||||||||||||||||||| | | ||| |||| ||||||| | |
Sbjct 313 ATGATCGATGATGTGGTTAAGCGTAGAGTTTGT-GATCTAATGGTTACCAATAACC-CGT 370
Query 390 ATGTTGTTGATGAAACGTTAGTTACCATGCCTCTATCGCTGTATTCATGTGCAACACTGG 449
|||||||| |||||| |||||||| |||||| |||| || ||||||||||||||| |||
Sbjct 371 ATGTTGTTAATGAAAAGTTAGTTAAAATGCCTATATCCCTTTATTCATGTGCAACATTGG 430
Query 450 TGAATTTGACCCTCTCCTTTGTTGCCATGAATAAGCCACAGTCAGAATTGGTTTCTTTAC 509
||||||| | |||||| ||||||||||||||||| | || |||||||| ||||| |||||
Sbjct 431 TGAATTTAAACCTCTCTTTTGTTGCCATGAATAATCTACCGTCAGAATCGGTTTGTTTAC 490
Query 510 CTTGTGTAAAGACCATATATCTAGATGCAGTGAAATTTGATGGTGATGATTCAATTCTAG 569
|| |||| |||||| ||||| || ||| || ||| ||||||| ||| | || |||| |
Sbjct 491 CTCGTGTCAAGACCTTATATTTACATGGGGTTAAACTTGATGGCGAT--TCCA-TTCTGG 547
Query 570 AGACTCTCGTATCGGGTTGTTCGGTGCTTGACGATTTAACGGTGATTGCGCATCCTGAAG 629
|||||||||||| |||||||||| || || |||||||| ||| || ||||||||| |
Sbjct 548 GGACTCTCGTATCAAGTTGTTCGGTTCTCGAAGATTTAACCGTGGTTACGCATCCTGGTG 607
Query 630 ATTATGCCCAAGTT-GTATGTGTTCGCTCTCGATCATTAAAAAGCTTCACACTAGAGTCT 688
| |||| ||| | |||||| ||||||||| |||| |||||||||||||| ||||||||
Sbjct 608 ACTATGAG-AAGGTCGTATGTTTTCGCTCTCAATCAGTAAAAAGCTTCACAATAGAGTCT 666
Query 689 CAGAGTCAGTATCAAGACCCCAATGTTGTA-ATTGACTGTCCAAGGCTTGAGTATATGAG 747
||| || ||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| |
Sbjct 667 CAGTGTGAGTATAAAGACCCCAATGTTG-AGATTGATTGTCCTAGGCTTGAGTATATGTG 725
Query 748 TGTTAGGGGATACCAACCTGCAAGCATTGTAGTACATAGTATTGGTCCTTATGCAAAGGT 807
| |||||| ||||||| ||| |||| |||||||||| ||||||||||| |||||||||||
Sbjct 726 TATTAGGGAATACCAATCTGAAAGCTTTGTAGTACACAGTATTGGTCCCTATGCAAAGGT 785
Query 808 AAACATCGATGTGATGTTTGAAGTTGACTATGAAGATCCACCGGCAATCA-CTATGATCC 866
| || ||||| | | ||||||||||| ||||||||||||| ||| || | ||||||||
Sbjct 786 AGACGTCGATATTTTCTTTGAAGTTGAGTATGAAGATCCACTGGCGAT-ATCTATGATCA 844
Query 867 GCAGTTTTCTCACCGCGATATCCAAAGCCCATGAAATGACCATCTCAACTCGAACTTTAG 926
| | ||||||||||| ||||||||||| || ||||||||||||||||| |||||| ||||
Sbjct 845 GAAATTTTCTCACCGGGATATCCAAAGTCCGTGAAATGACCATCTCAAGTCGAACGTTAG 904
Query 927 AGCTCATC-GACGGCTACCATTTGATGGTGAATG-AGTTGCCT-AAGTTTTCCAACTTGT 983
|| ||||| | ||||| || | |||||||| | | || ||| || |||||||||||||
Sbjct 905 AGGTCATCCGT-GGCTATCACTCCATGGTGAAAGCA-TTACCTCAA-TTTTCCAACTTGT 961
Query 984 CTCGCCTAAATGCTTTCTTAGAC-AAGTCTTTTTGGGAACGT-TTACCAGGT-TTTCTTG 1040
|| || | ||||||| |||| | || || | |||||||| | ||||||| | |||||||
Sbjct 962 CTAGCTTGGATGCTTTGTTAGTCGAA-TCATATTGGGAAC-TCTTACCAG-TCTTTCTTG 1018
Query 1041 GTTGTTGCATCAATCTGAATTCATTCGTCCTGGAACTTGACGGTCCAT-CAGAGATAGAG 1099
|||||||||||||||| |||||| ||||| |||||||||| || || | | |||||||||
Sbjct 1019 GTTGTTGCATCAATCTAAATTCACTCGTCGTGGAACTTGATGG-CCTTTCCGAGATAGAG 1077
Query 1100 GAGATTAAAGTTTCACCACTGCTTCAAGATGCTCTATCCGCTCGTGGGTTTGTTCAGCTG 1159
||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |
Sbjct 1078 GAGTTTAAAGTTTCACCACTGCTTCAAGATTCCCTATCTGCTCGTGGGTTTGTTCAGCAG 1137
Query 1160 AAGACACCACTTTCAGTCACAAGGACGTCAAGTGAGAGGAAACTAGCAGCATATTTTGTG 1219
||||||||| |||||||||||| ||| |||||||| |||||| |||||||||||||||||
Sbjct 1138 AAGACACCAGTTTCAGTCACAAAGACATCAAGTGAAAGGAAAATAGCAGCATATTTTGTG 1197
Query 1220 AAGAAAAGTGGCTAA 1234
|||||||||||||||
Sbjct 1198 AAGAAAAGTGGCTAA 1212
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5