BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925023 Length=1255 Score E Sequences producing significant alignments: (Bits) Value AT1G60400.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1260 0.0 > AT1G60400.1 | Symbols: | F-box/RNI-like superfamily protein | chr1:22254405-22255798 FORWARD LENGTH=1212 Length=1212 Score = 1260 bits (682), Expect = 0.0 Identities = 1043/1215 (86%), Gaps = 34/1215 (3%) Strand=Plus/Plus Query 34 CAAAACCAAT-GGCTCGGGGATAGATAGGTTAAGCGATTTACCAGAGCATTTGTCGTGTC 92 ||||| | || ||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 18 CAAAAGC-ATAGGCTCGGGGATAGATAGGTTAAGCGCTTTACCAGAGCATTTGTTGTGTC 76 Query 93 GTATACTCTCTCACCTCTCCACCAAGGACTCGGTTCGTACGAGCGTTTTGTCTAAGCATT 152 ||||||||||| | |||||||||||||| |||||||| ||||| |||||||||||||||| Sbjct 77 GTATACTCTCTGAACTCTCCACCAAGGATTCGGTTCGCACGAGTGTTTTGTCTAAGCATT 136 Query 153 GGAGAAACCTTTGGTTACATGTTCCTGCTTTGG-ATTTGAATACCATTGATTTTCCAGAT 211 ||||||| ||||||||||||||||||| ||||| ||| ||| |||| ||||||||||||| Sbjct 137 GGAGAAATCTTTGGTTACATGTTCCTGTTTTGGAATTGGAA-ACCAGTGATTTTCCAGAT 195 Query 212 AATCTCGTCTTTAAGGAGTTCATTGATAGATTTGTCGAATTTGACAAAGAGTTAGACTTA 271 ||||| ||||||| ||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 196 AATCTGGTCTTTAGGGAGTTCATTGATAGATTTGTCGGATTTGACAAAGAGATAGACTTA 255 Query 272 AAGAGATTCGAGATATTTTATGATGTTAATCATGACCACTCTTTTGATGAGTTTCTGTGG 331 ||||| ||||| ||||||||||||||| | ||| || || | |||||| ||||||||| Sbjct 256 AAGAGTTTCGATATATTTTATGATGTT-A--ATGTCCTCTGGTATGATGATTTTCTGTGG 312 Query 332 ATGATCGATGATGTGGTTAAGCGTAGAGTTTGTCG-TGTAACAGTTATCAATAACGTC-T 389 ||||||||||||||||||||||||||||||||| | | ||| |||| ||||||| | | Sbjct 313 ATGATCGATGATGTGGTTAAGCGTAGAGTTTGT-GATCTAATGGTTACCAATAACC-CGT 370 Query 390 ATGTTGTTGATGAAACGTTAGTTACCATGCCTCTATCGCTGTATTCATGTGCAACACTGG 449 |||||||| |||||| |||||||| |||||| |||| || ||||||||||||||| ||| Sbjct 371 ATGTTGTTAATGAAAAGTTAGTTAAAATGCCTATATCCCTTTATTCATGTGCAACATTGG 430 Query 450 TGAATTTGACCCTCTCCTTTGTTGCCATGAATAAGCCACAGTCAGAATTGGTTTCTTTAC 509 ||||||| | |||||| ||||||||||||||||| | || |||||||| ||||| ||||| Sbjct 431 TGAATTTAAACCTCTCTTTTGTTGCCATGAATAATCTACCGTCAGAATCGGTTTGTTTAC 490 Query 510 CTTGTGTAAAGACCATATATCTAGATGCAGTGAAATTTGATGGTGATGATTCAATTCTAG 569 || |||| |||||| ||||| || ||| || ||| ||||||| ||| | || |||| | Sbjct 491 CTCGTGTCAAGACCTTATATTTACATGGGGTTAAACTTGATGGCGAT--TCCA-TTCTGG 547 Query 570 AGACTCTCGTATCGGGTTGTTCGGTGCTTGACGATTTAACGGTGATTGCGCATCCTGAAG 629 |||||||||||| |||||||||| || || |||||||| ||| || ||||||||| | Sbjct 548 GGACTCTCGTATCAAGTTGTTCGGTTCTCGAAGATTTAACCGTGGTTACGCATCCTGGTG 607 Query 630 ATTATGCCCAAGTT-GTATGTGTTCGCTCTCGATCATTAAAAAGCTTCACACTAGAGTCT 688 | |||| ||| | |||||| ||||||||| |||| |||||||||||||| |||||||| Sbjct 608 ACTATGAG-AAGGTCGTATGTTTTCGCTCTCAATCAGTAAAAAGCTTCACAATAGAGTCT 666 Query 689 CAGAGTCAGTATCAAGACCCCAATGTTGTA-ATTGACTGTCCAAGGCTTGAGTATATGAG 747 ||| || ||||| ||||||||||||||| | ||||| ||||| ||||||||||||||| | Sbjct 667 CAGTGTGAGTATAAAGACCCCAATGTTG-AGATTGATTGTCCTAGGCTTGAGTATATGTG 725 Query 748 TGTTAGGGGATACCAACCTGCAAGCATTGTAGTACATAGTATTGGTCCTTATGCAAAGGT 807 | |||||| ||||||| ||| |||| |||||||||| ||||||||||| ||||||||||| Sbjct 726 TATTAGGGAATACCAATCTGAAAGCTTTGTAGTACACAGTATTGGTCCCTATGCAAAGGT 785 Query 808 AAACATCGATGTGATGTTTGAAGTTGACTATGAAGATCCACCGGCAATCA-CTATGATCC 866 | || ||||| | | ||||||||||| ||||||||||||| ||| || | |||||||| Sbjct 786 AGACGTCGATATTTTCTTTGAAGTTGAGTATGAAGATCCACTGGCGAT-ATCTATGATCA 844 Query 867 GCAGTTTTCTCACCGCGATATCCAAAGCCCATGAAATGACCATCTCAACTCGAACTTTAG 926 | | ||||||||||| ||||||||||| || ||||||||||||||||| |||||| |||| Sbjct 845 GAAATTTTCTCACCGGGATATCCAAAGTCCGTGAAATGACCATCTCAAGTCGAACGTTAG 904 Query 927 AGCTCATC-GACGGCTACCATTTGATGGTGAATG-AGTTGCCT-AAGTTTTCCAACTTGT 983 || ||||| | ||||| || | |||||||| | | || ||| || ||||||||||||| Sbjct 905 AGGTCATCCGT-GGCTATCACTCCATGGTGAAAGCA-TTACCTCAA-TTTTCCAACTTGT 961 Query 984 CTCGCCTAAATGCTTTCTTAGAC-AAGTCTTTTTGGGAACGT-TTACCAGGT-TTTCTTG 1040 || || | ||||||| |||| | || || | |||||||| | ||||||| | ||||||| Sbjct 962 CTAGCTTGGATGCTTTGTTAGTCGAA-TCATATTGGGAAC-TCTTACCAG-TCTTTCTTG 1018 Query 1041 GTTGTTGCATCAATCTGAATTCATTCGTCCTGGAACTTGACGGTCCAT-CAGAGATAGAG 1099 |||||||||||||||| |||||| ||||| |||||||||| || || | | ||||||||| Sbjct 1019 GTTGTTGCATCAATCTAAATTCACTCGTCGTGGAACTTGATGG-CCTTTCCGAGATAGAG 1077 Query 1100 GAGATTAAAGTTTCACCACTGCTTCAAGATGCTCTATCCGCTCGTGGGTTTGTTCAGCTG 1159 ||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||||| | Sbjct 1078 GAGTTTAAAGTTTCACCACTGCTTCAAGATTCCCTATCTGCTCGTGGGTTTGTTCAGCAG 1137 Query 1160 AAGACACCACTTTCAGTCACAAGGACGTCAAGTGAGAGGAAACTAGCAGCATATTTTGTG 1219 ||||||||| |||||||||||| ||| |||||||| |||||| ||||||||||||||||| Sbjct 1138 AAGACACCAGTTTCAGTCACAAAGACATCAAGTGAAAGGAAAATAGCAGCATATTTTGTG 1197 Query 1220 AAGAAAAGTGGCTAA 1234 ||||||||||||||| Sbjct 1198 AAGAAAAGTGGCTAA 1212 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61696469805 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5