BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925029

Length=284
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G35725.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   278    2e-74


> AT4G35725.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: embryo, 
sepal; EXPRESSED DURING: 4 anthesis, C globular stage; Has 30201 
Blast hits to 17322 proteins in 780 species: Archae - 12; 
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). 
| chr4:16929943-16930560 REVERSE LENGTH=532
Length=532

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 214/245 (87%), Gaps = 3/245 (1%)
 Strand=Plus/Plus

Query  4    GAA-AAACACAATCTTTCTATGATGATGGGAAAAAATTCGTCTAAGTCTGCTTTCATCAT  62
            ||| ||||| |||||||||| || ||||||||||  ||| || |||||||||||||||||
Sbjct  51   GAAGAAACATAATCTTTCTACGACGATGGGAAAATTTTCATCCAAGTCTGCTTTCATCAT  110

Query  63   CCTTTTAGCTTTTACTGTGATGATATCCCTGACATTTCAGATTACTGAGTCGAAACGTCT  122
            |||||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||||
Sbjct  111  CCTTTTAGCTTTTACTGTGATGGTATCCGTGACAGTTCAGATTGCTGAGGCGAAACGTCT  170

Query  123  CTTACCTGAAGAAACTTCTCTGCATCCTGAAGCTTCACTATCGGTTAAACCAAATGG-GT  181
            |||| ||||| ||||||||||| ||| | |||||||| ||| |||||||| |||||| ||
Sbjct  171  CTTATCTGAAAAAACTTCTCTGAATCTTAAAGCTTCAATATTGGTTAAACAAAATGGAGT  230

Query  182  TTAGTTTTTGTACACCAAAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTT  241
            |  |||||||||| ||| |||||||||| |||||||||| |||| | |||||||||||||
Sbjct  231  TG-GTTTTTGTACGCCAGAATGCAAAGAGTTATGTTTTGCTACAAGTTGTTATTGCGTTT  289

Query  242  GCCCT  246
            | |||
Sbjct  290  GTCCT  294


 Score =  145 bits (78),  Expect = 3e-34
 Identities = 98/108 (91%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  139  TCTCTGCATCCTGAAGCTTCACTATCGGTTAAACCAAATGGGTTTAGTTTTTGTACACCA  198
            ||| |||||| ||||||| |||||||| |||| | ||||| | ||||||||||||| |||
Sbjct  325  TCTGTGCATCATGAAGCTCCACTATCGATTAAGCAAAATGAGCTTAGTTTTTGTACGCCA  384

Query  199  AAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGCCCT  246
            |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  385  AAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCCT  432



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13069614740


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5