BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925029 Length=284 Score E Sequences producing significant alignments: (Bits) Value AT4G35725.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 278 2e-74 > AT4G35725.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, sepal; EXPRESSED DURING: 4 anthesis, C globular stage; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:16929943-16930560 REVERSE LENGTH=532 Length=532 Score = 278 bits (150), Expect = 2e-74 Identities = 214/245 (87%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 4 GAA-AAACACAATCTTTCTATGATGATGGGAAAAAATTCGTCTAAGTCTGCTTTCATCAT 62 ||| ||||| |||||||||| || |||||||||| ||| || ||||||||||||||||| Sbjct 51 GAAGAAACATAATCTTTCTACGACGATGGGAAAATTTTCATCCAAGTCTGCTTTCATCAT 110 Query 63 CCTTTTAGCTTTTACTGTGATGATATCCCTGACATTTCAGATTACTGAGTCGAAACGTCT 122 |||||||||||||||||||||| ||||| ||||| |||||||| ||||| |||||||||| Sbjct 111 CCTTTTAGCTTTTACTGTGATGGTATCCGTGACAGTTCAGATTGCTGAGGCGAAACGTCT 170 Query 123 CTTACCTGAAGAAACTTCTCTGCATCCTGAAGCTTCACTATCGGTTAAACCAAATGG-GT 181 |||| ||||| ||||||||||| ||| | |||||||| ||| |||||||| |||||| || Sbjct 171 CTTATCTGAAAAAACTTCTCTGAATCTTAAAGCTTCAATATTGGTTAAACAAAATGGAGT 230 Query 182 TTAGTTTTTGTACACCAAAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTT 241 | |||||||||| ||| |||||||||| |||||||||| |||| | ||||||||||||| Sbjct 231 TG-GTTTTTGTACGCCAGAATGCAAAGAGTTATGTTTTGCTACAAGTTGTTATTGCGTTT 289 Query 242 GCCCT 246 | ||| Sbjct 290 GTCCT 294 Score = 145 bits (78), Expect = 3e-34 Identities = 98/108 (91%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 139 TCTCTGCATCCTGAAGCTTCACTATCGGTTAAACCAAATGGGTTTAGTTTTTGTACACCA 198 ||| |||||| ||||||| |||||||| |||| | ||||| | ||||||||||||| ||| Sbjct 325 TCTGTGCATCATGAAGCTCCACTATCGATTAAGCAAAATGAGCTTAGTTTTTGTACGCCA 384 Query 199 AAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGCCCT 246 |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 385 AAATGCAAAGAATTATGTTTTGGTACAGGCTGTTATTGCGTTTGTCCT 432 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13069614740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5