BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925035
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60230.1 | Symbols: | Radical SAM superfamily protein | chr... 2353 0.0
> AT1G60230.1 | Symbols: | Radical SAM superfamily protein | chr1:22212084-22214424
REVERSE LENGTH=1594
Length=1594
Score = 2353 bits (1274), Expect = 0.0
Identities = 1368/1414 (97%), Gaps = 3/1414 (0%)
Strand=Plus/Plus
Query 7 ATTTTGTGA-T--TCGTATATCGACGACAATGAGGCGTCTTGGAATCATCACTCTCACCA 63
||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 62 ATTTTGTGATTGGTCGTATGTCGACGACAATGAGGCGTCTTGGAATCATCACTCTCACCA 121
Query 64 ATTCCGCCGCCGTCGTCACTCCGACACTACTCTCTTCAACGGCAGCTTTCCCCGGAACCC 123
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 122 ATTCCGCCGCCGTCGTCACTCCGTCGCTACTCTCTTCAACGGCAGCTTTCCCCGGAACCC 181
Query 124 TAACTCTACCCTCTCCTCTCCACAACCACCGTCTTACCAATTCCATTCGCTTCCACAAAT 183
||||| |||||||||| |||| || | |||||||||||||||| |||| ||| ||| |||
Sbjct 182 TAACTTTACCCTCTCCCCTCCTCAGCGACCGTCTTACCAATTCAATTCTCTTTCACGAAT 241
Query 184 CCAAAAGCctctctttctcttgcttctcttcttcttcttcttcttcagcagcttatcttc 243
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CCAGAAGCCTCTCCTTCTCTTGCTTCTCTTCTTCTTCTTCTTCTTCAGCAGCTTATCTTC 301
Query 244 cttcACTAGAAGAGTACCCATCAACTAAAGGTTCTGTGGCGAGAGATGATAAGCAGAAGG 303
||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||
Sbjct 302 CTTCACTAGAAGAGTACCCATCAGCTAAAGGTTCTGTGAAGAGAGATGATAACCAGAAGG 361
Query 304 TGGTCTTGAAGGGTATGACTTATGCTGCTCTCCAAGAATGGGTTCAGTCTCATGGGTTTA 363
|||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 362 TGGTCTTGAAGGGTATGACTTATGCTTCGCTCCAAGAATGGGTTCAATCTCATGGGTTTA 421
Query 364 GACCAGGACAGGCTTTGATGTTGTGGAAGAGATTATACAAGGACAATATATGGGCAAGTA 423
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 422 GACCAGGACAGGCTTTAATGTTGTGGAAGAGATTGTACAAGGACAATATATGGGCAAATA 481
Query 424 ATGTTGATGAACTTGAAGGTTTGAATAAAGATCTCAAGAGAATGATTAGTGAACATGCTG 483
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 482 ATGTTGATGAACTTGAAGGTTTGAACAAAGATCTCAAGAGAATGATTAGTGAACATGCTG 541
Query 484 AGTTTGGGGCGTTATCGTTTAAGGATATTCGTTCCGCTTCAGATGGAACTAGGAAGATTC 543
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 542 AGTTTGGGGCATTATCTTTTAAGGATATTCGTTCGGCTTCAGATGGAACTAGGAAGATTC 601
Query 544 TGTTCACGTTGGATGATGGACTTGTGATTGAGACTGTTGTTATACCTTGTGATCGAGGCA 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TGTTCACGTTGGATGATGGACTTGTGATTGAGACTGTTGTTATACCTTGTGATCGAGGCA 661
Query 604 GGACTACAGTTTGTGTTTCGAGCCAAGTGGGTTGTGCCATGAATTGTCAGTTCTGCTACA 663
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 662 GGACAACAGTTTGTGTTTCGAGCCAAGTTGGTTGTGCCATGAATTGTCAGTTCTGCTACA 721
Query 664 CTGGCAGGATGGGCTTGAAGAGAAATCTCACTACTGCTGAGATAGTTGAGCAGGCTGTTT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CTGGCAGGATGGGCTTGAAGAGAAATCTCACTACTGCTGAGATAGTTGAGCAGGCTGTTT 781
Query 724 ATGCCAGGCGATTGCTTTCCCATGAAGTTGGGTCAATAACAAATGTCGTATTTATGGGAA 783
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 782 ATGCCAGGCGATTGCTTTCCCATGAAGTTGGGTCAATTACAAATGTCGTCTTTATGGGAA 841
Query 784 TGGGGGAGCCATTTCACAACATTGATAATGTCATCAAAGCTGCAAACATAATGGTAGACG 843
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 842 TGGGAGAGCCATTTCACAACATTGACAATGTCATCAAAGCTGCAAACATAATGGTAGACG 901
Query 844 AGAATGGACTTCACTTCAGTCCCCGCAAGGTCACAGTCTCGACTAGTGGCCTTGTTCCTC 903
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 AGAATGGACTTCACTTCAGTCCCCGCAAGGTCACAGTCTCGACTAGTGGCCTTGTTCCTC 961
Query 904 AGCTGAAGCGTTTTCTCCGTGAGTCAAATTGCGCTTTGGCAGTCAGTCTGAATGCAACAA 963
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 AGCTGAAGCGTTTTCTCCGTGAGTCAAATTGCGCTTTGGCAGTCAGTCTGAATGCAACAA 1021
Query 964 CCGATGAGGTCAGAAACTGGATCATGCCCATAAACAGGAAATACAAGTTATCTTTGCTCC 1023
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1022 CTGATGAGGTCAGAAACTGGATTATGCCTATAAACAGGAAATACAAGTTATCTTTGCTCC 1081
Query 1024 TTGAGACGCTCAGAGAAGGACTCAGTTCAAGGCATAAGTACAAAGTGTTGTTTGAATATG 1083
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 TTGAGACGCTCAGAGAAGGACTCAGTTCAAGGCATAAGTACAAAGTGTTGTTTGAATATG 1141
Query 1084 TAATGCTCGCAGGAGTCAATGACAACATGGATGATGCAAGGAGGCTAGTGGAGCTTGTGC 1143
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1142 TAATGCTCGCAGGAGTCAATGACAGCATGGATGATGCAAGGAGGCTAGTGGAGCTTGTGC 1201
Query 1144 AGGGGATTCCATGCAAGATCAACCTTATTCAATTCAACCCACACAGTGGTTCTCAGTTCA 1203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGGGGATTCCATGCAAGATCAACCTTATTCAATTCAACCCACACAGTGGTTCTCAGTTCA 1261
Query 1204 TACAGACCGAGGAAGACAAGATGATCAAGTTTCGTAACGTTTTGGCTGAAGGAGGCTGCA 1263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TACAGACCGAGGAAGACAAGATGATCAAGTTTCGTAACGTTTTGGCTGAAGGAGGCTGCA 1321
Query 1264 CAGTTCTCATGCGGTTTAGCCGAGGCAACGATCAAATGGCAGCATGTGGGCAGCTTGGTA 1323
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1322 CTGTTCTCATGCGGTTTAGCCGAGGCAATGATCAAATGGCAGCATGTGGGCAGCTTGGTA 1381
Query 1324 TGATTGGGGCGGTTCAGGCACCAGTGATGCGGGTGCCCGAGCAGTTCCGCGCCGCTTTAA 1383
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1382 TGATTGGGGCGGTTCAGGCACCAGTGATGCGGGTGCCCGAGCAGTTCCGCACCGCTTTAA 1441
Query 1384 AAGCATCAGTTTGATCTGTCAAATGTCAGATTAG 1417
|||||||||||||||||||||||||| ||||||
Sbjct 1442 AAGCATCAGTTTGATCTGTCAAATGTTGGATTAG 1475
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5