BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925049
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60075.1 | Symbols: | pseudogene, F-box protein-related, co... 1249 0.0
AT4G21240.1 | Symbols: | F-box and associated interaction doma... 582 2e-165
> AT1G60075.1 | Symbols: | pseudogene, F-box protein-related,
contains TIGRFAM TIGR01640 : F-box protein interaction domain
| chr1:22150916-22152139 FORWARD LENGTH=1224
Length=1224
Score = 1249 bits (676), Expect = 0.0
Identities = 1071/1250 (86%), Gaps = 74/1250 (6%)
Strand=Plus/Plus
Query 26 ATGGATAGACG-AGAAGAAGAGGCGGAAGATAAAGAAATAAGTATACAATCTAAAGAAGA 84
||||||||| | ||| |||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1 ATGGATAGA-GTAGAGGAAGAGGCGGAAGATAGGGAAGTAAGTATACAATCTAAAGAAGA 59
Query 85 TGAGAGTTGTAGAAAGTTTCTCGTGATGATTCCTCTTGATCTGATTCATGAGATACTCTT 144
|||||||| | | |||||||||| |||||||||||||||||| |||| ||| ||||||||
Sbjct 60 TGAGAGTTTTTGTAAGTTTCTCGAGATGATTCCTCTTGATCTAATTCCTGATATACTCTT 119
Query 145 GAGACTTCCTGCTAAATCCGTTGCAAAGTTCCGTTGCGTATCAAAGCTATGGTCATCCAT 204
|||||||||||||||||| | ||| | ||||| || || || ||||||||||||| ||
Sbjct 120 GAGACTTCCTGCTAAATCTGCTGCGAGGTTCCACTGGGTCTCTTAGCTATGGTCATCAAT 179
Query 205 AACCACTCGCCCAGATTTCATCAGGTCGTTCGTGAGTCAGTCTTCAACTCGGTTGTGTCT 264
||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 180 CACCACTCATCCAGATTTCATCAGGTCGTTCGCGAGTCAGTCTTCAACTAGGTTGTGTCT 239
Query 265 TTTCGTCTGCGTGAACACAAGGGACGAGCGTCTTTCCTGCTCAAT-CCCTCAACATGAAA 323
||| ||||||||||| ||||| ||| ||||| ||| |||| |||| ||| ||||||||||
Sbjct 240 TTTGGTCTGCGTGAAAACAAGTGACAAGCGTATTTTCTGCGCAATGCCC-CAACATGAAA 298
Query 324 ATTCGGACAGATCATCTTATCCTCATGTGGAGCGTTATCGGAAAAATGCTC-CAAAATTT 382
|| |||||||||||| |||||| |||||||||||||||| |||| | ||| | | ||||
Sbjct 299 ATCCGGACAGATCATGTTATCCACATGTGGAGCGTTATCTGAAAGACACTCTC-ATATTT 357
Query 383 GATTATCACCAACGGTACTCCGAATCGGTCCATGGCTTGATAGGTTTGGGAGATTTTTGT 442
||||||||| || ||| | || | |||||||||||||||||| |||||||||||| |||
Sbjct 358 GATTATCACGAATGGT-C-CC-AGTCGGTCCATGGCTTGATATGTTTGGGAGATTCTTG- 413
Query 443 GGGAATATTGTAGTTTGGAATCCAACCATGAGACAACATGTTACCTTACCGAAACCCGAA 502
||| ||||||||||||||||||||| ||||||||||||||||||||| | || |
Sbjct 414 GGGCATATTGTAGTTTGGAATCCAATCATGAGACAACATGTTACCTT------A-CC--A 464
Query 503 CCAAGAGTCCCATGTGTATGTAGCTGTTTAGGATACGATCCGGTTGAGGGCAAGTATAAA 562
|| |||| ||| || |||||||| ||||||||| |||||||| ||||| |||||||||
Sbjct 465 --AA-AGTCGCATTTGAATGTAGCTCTTTAGGATATGATCCGGTCGAGGGTAAGTATAAA 521
Query 563 GTCTTGTGCATCTCAGGTTATAGATACCAAGATCCTCTTGTTTTTACTTTGGGACCTCAA 622
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GTCTTGTGCATCTCATGCTCTAGATACCAAGATCCTCTTGTTTTTACTTTGGGACCTCAA 581
Query 623 GAATCATGGAGAGTGGCCCAAAATAGCCCTAAACATGTCCCTCGATGCACCTG-GGTACT 681
||||||||||||||| | ||||||| ||||||||||||||||| || | || | || |||
Sbjct 582 GAATCATGGAGAGTGACACAAAATACCCCTAAACATGTCCCTCTATCCGCC-GAGGGACT 640
Query 682 AAT---AAGTAAATGCATCAAC-GGGAATTTGTATTATGAAGCGAGTATACCTTTTGGAG 737
||| ||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 641 AATACAAAGTATATGTATCAACGGGGAA-GTGTATTATGAAGCGAGTATACCTTTTGGAG 699
Query 738 TCAATGATAGTTTTGAAGTTGAAAAAGTCCTTATGAGCTTCGATGTGAGGTACGAAAAGT 797
|| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 700 TCGATGATAGTTCTGAAGTTGAGAAAGTCCTTATGAGCTTCGATGTGAGGTACGAAAAGT 759
Query 798 TCAACACAATaaaaaaaCCAGC---TGATGATTTACTTTGCGAATTTTTCCTCGACTACG 854
|||||||||||| |||| |||| |||| ||||||||||| ||||||||||| ||||||
Sbjct 760 TCAACACAATAAGAAAATCAGCGGCTGATAATTTACTTTGCAAATTTTTCCTCAACTACG 819
Query 855 AAGGAAAATTAGCATGGGTTTGCGC---CGACGTCTCTTGTATAA-GATTTTGGGTTTTG 910
|||||||||| |||||||||||| | |||||||||| ||| || ||||||||||||||
Sbjct 820 AAGGAAAATTTGCATGGGTTTGCTCTGACGACGTCTCTGGTA-AATGATTTTGGGTTTTG 878
Query 911 GAGGATGAAGAGAAACAAGAATGGTCGCTTAGAAAATTTCTTCTCCCTATTCCAAAATTT 970
||||||||||||||||||||| |||| ||||||||||||| ||| | |
Sbjct 879 GAGGATGAAGAGAAACAAGAACGGTCACTTAGAAAATTTC--CTC---A----A------ 923
Query 971 CCTCTACGTGACACGATCTGGGAAGTTTCTTGGGAGCTGAGAGGTATTACTCACGAT--A 1028
| ||||| |||||||| |||||||||||| |||||||||||||||||| ||| |
Sbjct 924 C------GTGACCCGATCTGGAAAGTTTCTTGGGGGCTGAGAGGTATTACTCATGATCCA 977
Query 1029 CTGGTGAGTTTATTTTTACAGATGAAACAACATCTGAAGCAATTTATGTCTTATATTATG 1088
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 978 CTGGTGAGTTTATTTATACAGCTGCAACAACATCTGAAGCAATTTATGTCTTATATTATG 1037
Query 1089 ATCCAAAAAGAAACCGCGTAAGGAGGGTCAAATATGAAGGTATT--GGA---GG-G--GA 1140
|||||||||||| || |||||||||||||||||||| ||| ||| || | ||
Sbjct 1038 ATCCAAAAAGAACCCTAGTAAGGAGGGTCAAATATGATTATATGAAGGAATTGGTGACGA 1097
Query 1141 AGAATTCTGGAAGCTTAATGATCATTACAATGTAAGAGAGGTCCGTTTGTT-TCCTAATC 1199
||||||||||||||||||| || | | ||||||||||||||||| | || || |||||
Sbjct 1098 AGAATTCTGGAAGCTTAATCATAA--A-AATGTAAGAGAGGTCCGCTA-TTATCATAATC 1153
Query 1200 ACAGTGAGAGTCTAATGTCTTTGGAGGACGTTC-TCTCTTAGCATATGAT 1248
||| ||||||||| |||||||||||||| |||| || |||||||||||||
Sbjct 1154 ACACTGAGAGTCTCATGTCTTTGGAGGAAGTTCCTCGCTTAGCATATGAT 1203
> AT4G21240.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:11322411-11323664 FORWARD LENGTH=1254
Length=1254
Score = 582 bits (315), Expect = 2e-165
Identities = 872/1128 (77%), Gaps = 89/1128 (8%)
Strand=Plus/Plus
Query 71 CAATCTAAAGAAGATGAGA---GT-TGTAGAAAG-TTTCTCGTGATGATTCCTCTTGATC 125
|||||||||||||| |||| || | | | ||| ||| ||| | |||| |||||||||
Sbjct 61 CAATCTAAAGAAGACGAGAGCCGTCT-TGGTAAGATTT-TCGAGCTGATACCTCTTGATA 118
Query 126 TGATTCATGAGATACTCTTGAGACTTCCTGCTAAATCCGTTGCAAAGTTCCGT-TGCGTA 184
|||||| ||| |||||||||||||| || |||||||| | || | ||||||| | |||
Sbjct 119 TGATTCCTGATATACTCTTGAGACTGCCCGCTAAATCTGCTGTGAGGTTCCGTAT-CGTC 177
Query 185 TCAAAGCTATGGTCATCCATAACCACTCGCCCAGATTTCATCAGGTCGTTCGTGAGTCAG 244
|| |||||||||| |||||| |||||||| ||| |||||||||||||||||| | ||
Sbjct 178 TCGAAGCTATGGTTATCCATCACCACTCGTCCATATTTCATCAGGTCGTTCGCGTTTCCT 237
Query 245 TCTTCAACTCGG-TTGTGTCTTTTCGTCTGCGTGAACA-CAAGGGACGA-GCGTCT-TTC 300
|||||||||||| || |||||| | | |||||| || | |||| ||| | |||| | ||
Sbjct 238 TCTTCAACTCGGCTT-TGTCTTATGGCCTGCGTCAA-AGCAAGAGAC-ATGCGTTTATTT 294
Query 301 CTGCTCAAT-CCCTCAACATGAAAATTCGGACAGATCATCTTATC-CTCATGTGGAGCGT 358
| |||| | | | ||||||| | | ||| | |||||| | |||||||||| |||
Sbjct 295 AT-CTCACTGCAC-CAACATG---A-T--GAC-G--GATCTTA-CGCTCATGTGGACCGT 342
Query 359 TATCG-GA-AAAATGCTCCAAAATTTGATTATCACCAA--CG-GTACTCCGAATCGGTCC 413
| | | || ||||| | || ||| ||||||| | ||| || || |||||||| |||
Sbjct 343 TGT-GAGATAAAAT-CCCCTAAACATGATTATTA-CAATCCGAGT--TCCGAATCTGTCA 397
Query 414 ATGGCTTGATAG-GTTTGGGAGATTTTTGTGGGAATATTGTAGTTTGGAATCCAACCATG 472
| || ||| | | |||| ||||| ||| | ||||| |||||||||||||| | |||
Sbjct 398 ACGGTTTGGT-GTGTTTCGGAGA-CTTT-T-ACAATATCGTAGTTTGGAATCCTTCAATG 453
Query 473 AGACAACATGTTACCTTA-CCGAAACCCGAACCA-AGAGT-C--CCA--T-GTGTAT--G 522
|||||||||||||| ||| ||| |||| ||||| | ||| | || | | ||| |
Sbjct 454 AGACAACATGTTACATTACCCG-AACCTAAACCACACAGTACTGTCAGGTACTTTATACG 512
Query 523 TAGCTGTTTAGGATACGATCCGGTTGAGGGCAAGTATAAAGTCTTGTGCATCTCAGGTTA 582
|||||||||||||||||||||||| |||| ||||||||||| |||| ||||||||| ||
Sbjct 513 TAGCTGTTTAGGATACGATCCGGTCGAGGATAAGTATAAAGTATTGTCCATCTCAGGCTA 572
Query 583 -TA-GAT----ACCAAGATCCTCTTGTTTTTACTTTGGGACCTCAAGAATCATGGAGAGT 636
| || |||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 573 CCACAATGGCAACCACGATCCTCTCGTTTTTACATTGGGACCTCAAGAATCATGGAGAGT 632
Query 637 GGCCCAAAATAGCCCTAAACATGTCCCTCGATGC-ACCTG-GG-T-ACTAATAAGTAAAT 692
| ||||||||||||| | || |||||| | | ||| | || | || | || ||| ||
Sbjct 633 GATCCAAAATAGCCCTTTAGATATCCCTCTA-CCAACCGGAGGATCACGAGTAGGTACAT 691
Query 693 GCATCAACGGGAATTTGTATTATGAAGCG-AGTATACCTTTTGGAGTCA-ATGATAGTTT 750
||||||||||| | |||| ||||||||| || |||| |||| ||| | |||||| |||
Sbjct 692 GCATCAACGGGCACGTGTACTATGAAGCGCAG-ATACGTTTTAAAGT-AGATGATA-TTT 748
Query 751 TGAA-GTTGAAAA-AGTCCTTATGAGCTTCGATGTGAGGTACGAAAAGTTCAACACAATa 808
| || ||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 749 TTAATTTTGAAAATA-TCCTTATGAGCTTCGATGTGAGGTACGAAAAGTTCAACACAATA 807
Query 809 aaaaaaCCAGCTGATGATTTACTTTGCGAATTTT--TCCTCGACTACGAAGGAAAATTAG 866
||||||||||||||| | |||| |||| || | ||| ||||| ||||||||||||
Sbjct 808 AAAAAACCAGCTGATCCTACACTT--CGAAACTTCATGCTCAACTACCAAGGAAAATTAG 865
Query 867 CATGGGTTTGCGCCGACGTCT-CTTGTATAAGATTTTGGGTTTTGGAGGATGAAGAGAAA 925
||||| ||||| |||| | | ||| |||||| ||||||||||| || |||| ||| |||
Sbjct 866 CATGGTTTTGCTCCGAT-TATTCTTCTATAAGGTTTTGGGTTTTAGATGATGGAGACAAA 924
Query 926 CAAGAATGGTCGCTTAGAAAA-TTTCTTCTCCCTATTCCAAAATTTCCTCTACGTGACAC 984
|||||||||||||| | |||| ||| || | ||| |||||| | |||| | |||| |
Sbjct 925 CAAGAATGGTCGCTCA-AAAACTTTATTTTGCCTTTTCCAATCTCTCCTGAAATTGACCC 983
Query 985 GATCTGGGAAGTTTCTTGGGA-GCTGAGAGGTATTACTCACGATACTGGTGAGTTTATTT 1043
|||| ||| | | | || ||||| ||| ||||||| |||||||||||||| ||||
Sbjct 984 CATCTTTGAA-TGTAGAGTGATGCTGACTGGTGTTACTCATGATACTGGTGAGTTCATTT 1042
Query 1044 TTAC-AGATGAAACAACATCTGAAGCAATTTATGTCTTATATTATGATCCAAAAAGAAAC 1102
||| | ||| |||| | ||| ||| ||| ||| ||||||||||||||||| ||
Sbjct 1043 TTATTA-ATGCGACAATGTGTGATGCATTTTGTGTTTTATATTATGATCCAAAGAGTGGG 1101
Query 1103 CGCGTAAGGAGGGTCAAATATGAAGGTATTGGAGGG-GAAGAATTCTG 1149
| | ||||||| || | |||||||| ||||||| || ||||||||
Sbjct 1102 AGTGAAAGGAGGATCGAGTATGAAGGGATTGGAGACAGA-GAATTCTG 1148
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5