BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925059

Length=241
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61198.1 | Symbols:  | other RNA | chr3:22655884-22656599 RE...   152    1e-36
  AT1G10522.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   145    2e-34


> AT3G61198.1 | Symbols:  | other RNA | chr3:22655884-22656599 
REVERSE LENGTH=622
Length=622

 Score =  152 bits (82),  Expect = 1e-36
 Identities = 131/154 (85%), Gaps = 6/154 (4%)
 Strand=Plus/Minus

Query  81   AGTAGCGATCCTCTACAGCA-GAGGGGC-TCCGAAGAGACAATC--CGCCGTCAATCACA  136
            |||| |||||||||||||||  ||  || |||  | |||| |||   |||||||||||| 
Sbjct  152  AGTAACGATCCTCTACAGCACCAGATGCGTCC-TA-AGACGATCGTAGCCGTCAATCACG  95

Query  137  CTCAGGTCACACGGCTTTGATTCATCAACCAGGTTTAAGGGCCTGTCTCCTTAGAAATCA  196
            ||| | || ||||||  || ||||||||||||| ||||||||||||||||||||||||||
Sbjct  94   CTCTGATCGCACGGCCATGGTTCATCAACCAGGGTTAAGGGCCTGTCTCCTTAGAAATCA  35

Query  197  AGGAAACAGATGTACGAGACTATAGAACAGATCC  230
            |||||||||| ||||||| |||||||||||||||
Sbjct  34   AGGAAACAGAGGTACGAGCCTATAGAACAGATCC  1


> AT1G10522.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; 
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 
24 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr1:3469636-3471488 FORWARD LENGTH=980
Length=980

 Score =  145 bits (78),  Expect = 2e-34
 Identities = 135/161 (84%), Gaps = 10/161 (6%)
 Strand=Plus/Minus

Query  81   AGTAGCGATCCTCTACAGCAGAGG-GGC-TCCGAAGAGACAATC--CGCCGTCAATCACA  136
            |||| |||||||||||||||  ||  || |||| | |||| |||   ||| |||||||| 
Sbjct  157  AGTAACGATCCTCTACAGCACCGGATGCGTCCG-A-AGACGATCGTAGCCATCAATCACG  100

Query  137  CTCAGGTCACACGGCT-TTGATTCATCAACCA-GGTTTAAGGGCCTGTCTCCTTAGAAAT  194
            ||| |  | ||||| |  || ||||||||||| ||||| |||||||||||||||||||||
Sbjct  99   CTCTGACCGCACGG-TCATGGTTCATCAACCAGGGTTT-AGGGCCTGTCTCCTTAGAAAT  42

Query  195  CAAGGAAACAGATGTACGAGACTATAGAACAGATCCTGTTC  235
            |||||||||||| ||||||| ||||||||||||||||||||
Sbjct  41   CAAGGAAACAGAGGTACGAGCCTATAGAACAGATCCTGTTC  1



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10908101533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5