BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925061
Length=424
Score E
Sequences producing significant alignments: (Bits) Value
AT4G01000.1 | Symbols: | Ubiquitin-like superfamily protein | ... 331 3e-90
AT3G06455.1 | Symbols: | ubiquitin family protein | chr3:19805... 289 2e-77
> AT4G01000.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:431963-433849 REVERSE LENGTH=1593
Length=1593
Score = 331 bits (179), Expect = 3e-90
Identities = 246/277 (89%), Gaps = 10/277 (4%)
Strand=Plus/Plus
Query 153 AAGAAAGGAA-GAACTACGAAAGAAACGGTCTTTGTTGATGCAGTGTGTTGCAAACCTGC 211
|||| | ||| ||||| |||||||||| || | |||||||||||| |||||||||||||
Sbjct 1119 AAGAGA-GAAGGAACTGCGAAAGAAACAGTGTCTGTTGATGCAGTATGTTGCAAACCTGT 1177
Query 212 TGAACTGCTTAACTTTGATAACTTCAATTCAGCAACAGATATGGAGGTTTTGGGGATGGA 271
||||| |||||||||||| ||||||||||| || |||| ||||||||||||||||||||
Sbjct 1178 TGAACCACTTAACTTTGATGACTTCAATTCACCAGCAGACATGGAGGTTTTGGGGATGGA 1237
Query 272 GAGATTGAAGACAGAGCTTCAGTCAC-TCAGTCTGAAATGCCGG-GGGACATTGCGAGAG 329
|||||||||||| ||||||||||||| | ||||||| ||| || |||||||||||||||
Sbjct 1238 GAGATTGAAGACTGAGCTTCAGTCACGTG-GTCTGAAGTGC-GGAGGGACATTGCGAGAG 1295
Query 330 CTAGCTGTGAGGCTAATTTTACTTAAATCAACACCACTTGATAAGCTCCCAAAGAAATTG 389
| ||||| ||||||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1296 CGAGCTGCGAGGCTATTTTTACTTAAATCAACGCCACTCGATAAGCTCCCAAAGAAATT- 1354
Query 390 A-TGGCCAAGAAATGA-AGAACAACATCCAACTCCAA 424
| |||||||||||||| ||| ||||||||||||||||
Sbjct 1355 ACTGGCCAAGAAATGACAGA-CAACATCCAACTCCAA 1390
> AT3G06455.1 | Symbols: | ubiquitin family protein | chr3:1980542-1982162
FORWARD LENGTH=1488
Length=1488
Score = 289 bits (156), Expect = 2e-77
Identities = 207/232 (89%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 194 AGTGTGTTGCAAACCTGCTGAACTGCTTAACTTTGATAACTTCAATTCAGCAACAGATAT 253
||||||||||||||||| ||||| ||||||||||| | | ||||| |||| ||||||||
Sbjct 1171 AGTGTGTTGCAAACCTGTTGAACCGCTTAACTTTGCTGAGTTCAAAGCAGCCACAGATAT 1230
Query 254 GGAGGTTTTGGGGATGGAGAGATTGAAGACAGAGCTTCAGTCACTCAGTCTGAAATGCCG 313
|||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| |
Sbjct 1231 GGAGGTTTTGGGGATGGAGAGATTGAAGACTGAGCTTCAGTCACGCGGTCTGAAATGCAG 1290
Query 314 GGGGACATTGCGAGAGCTAGCTGTGAGGCTAATTTTACTTAAATCAACACCACTTGATAA 373
|||||||||||||||| ||||| ||||||| |||||||||||||||| || || |||||
Sbjct 1291 AGGGACATTGCGAGAGCGAGCTGCGAGGCTATTTTTACTTAAATCAACGCCCCTCGATAA 1350
Query 374 GCTCCCAAAGAAATTGA-TGGCCAAGAAATGAAGAACAACATCCAACTCCAA 424
|||||| |||||||| | ||||||||||||||||| ||||||||| || |||
Sbjct 1351 GCTCCCGAAGAAATT-ACTGGCCAAGAAATGAAGACCAACATCCATCTTCAA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20107099600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5