BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925067
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
AT4G18330.2 | Symbols: | Translation elongation factor EF1A/in... 907 0.0
AT1G04170.1 | Symbols: EIF2 GAMMA | eukaryotic translation init... 850 0.0
AT2G18720.1 | Symbols: | Translation elongation factor EF1A/in... 782 0.0
> AT4G18330.2 | Symbols: | Translation elongation factor EF1A/initiation
factor IF2gamma family protein | chr4:10126579-10128734
FORWARD LENGTH=1659
Length=1659
Score = 907 bits (491), Expect = 0.0
Identities = 691/787 (88%), Gaps = 16/787 (2%)
Strand=Plus/Plus
Query 26 GCGGAACAAGGGTTTAGCTGAACAAGATCTAAGTAAGCTTGATGTAA-ATGAGCTACATC 84
||| ||||||||||| || || |||||||||| |||||||||||||| | || ||||||
Sbjct 120 GCGTAACAAGGGTTTGGCGGAGCAAGATCTAACTAAGCTTGATGTAACA-AAGTTACATC 178
Query 85 CTCTGTCTCCCGAGGTCATATCTCGCCAGGCAACCATAAACATAGGAACCATTGGACATG 144
|||||| ||| || ||||| |||||||| ||||||||||| || ||||||||||| ||||
Sbjct 179 CTCTGTTTCCTGAAGTCATTTCTCGCCAAGCAACCATAAATATCGGAACCATTGGTCATG 238
Query 145 TTGCACACGG-AAAGTCTACGGTTGTGAAAGCTATTTCTGGTGTGCAGACTGTCCGTTTT 203
| || ||||| ||| || || | ||||||||||| |||||||| |||||||| ||||||
Sbjct 239 TCGCTCACGGTAAA-TCGACTATAGTGAAAGCTATCTCTGGTGTTCAGACTGTGCGTTTT 297
Query 204 AAGAATGAATTGGAGCGTAACATTACCATTAAACTTGGATATGCAAATGCCAAGATTTAC 263
||||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 298 AAGAATGAATTAGAGCGTAACATTACCATTAAGCTTGGTTATGCAAATGCAAAGATTTA- 356
Query 264 CAA-TGTGAGGATAACAAGTGCCCTAGACCAATGTGCTACAAGTCTTATGGGAGTGGGAA 322
||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 357 CAAGTGTGAGGATGACAAGTGCCCTAGACCAATGTGCTACAAGTCATATGGGAGTGGAAA 416
Query 323 AGAAGACAACCCAAATTGCGATGTCCCTGGATTTGAGAACTGCAAGATGA-AGCTACTGA 381
|||||||||||||| ||| |||||||| ||||||||||| |||||||||| | |||| ||
Sbjct 417 AGAAGACAACCCAACTTGTGATGTCCCCGGATTTGAGAATTGCAAGATGACA-CTACGGA 475
Query 382 GGCATGTCTCCTTTGTGGATTGCCCGGGACATGATATTCTCATGGCCACAATGCTCAATG 441
| |||||||| | ||| ||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 476 GACATGTCTCATGTGTCGATTGTCCGGGACATGATATTCTTATGGCGACAATGCTCAATG 535
Query 442 GGGCCGCCATCATGGATGGTGCTCTACTTTTAATTGCTGCGAATGAG-GTCTGTCCTCAA 500
| || || ||| ||||||||||| ||||| |||||||||| || ||| || ||||| |||
Sbjct 536 GAGCAGCAATCGTGGATGGTGCTTTACTTCTAATTGCTGCTAACGAGAGT-TGTCCACAA 594
Query 501 CCACAGACAGCTGAACATCTTGCTTCCGTCGATATGATGCACCTTAAGCATATTATAATC 560
||||| || ||||||||||||||||| || |||||||||| |||||||||||| ||||||
Sbjct 595 CCACAAACCGCTGAACATCTTGCTTCTGTTGATATGATGCGCCTTAAGCATATCATAATC 654
Query 561 CTTCAGAACAAGATTGATCTCATTCAA-GAAAAAGCCGCCATC-GAACAGCACACA-GCA 617
|||||||||||||||||||||||| || || |||||||||| | ||||||||| | ||
Sbjct 655 CTTCAGAACAAGATTGATCTCATT-AATGAGAAAGCCGCCA-CTGAACAGCAC-GAGGCT 711
Query 618 ATTCAGAGATTTATAACGAACACAAATGCCGAGGGTGCCCCTATAGTTCCTGTCTCAGCA 677
||||||| ||||||||||||||| ||||| |||| ||| |||||||||||||||||||||
Sbjct 712 ATTCAGAAATTTATAACGAACACGAATGCTGAGGATGCACCTATAGTTCCTGTCTCAGCA 771
Query 678 CAACTGAAATACAACATTGATGCTGTGTGCGAGTACATTGTCAAGAAGATTCCAATCCCT 737
|||||||||||||||||||||| |||| | || |||||||||||||||||||||||||||
Sbjct 772 CAACTGAAATACAACATTGATGTTGTGAGTGAATACATTGTCAAGAAGATTCCAATCCCT 831
Query 738 AAAAGGGATTTTGTGTCACCGCCAAAGATGATAATCATTCGTTCTTTTGATGTCAATAAA 797
|| || ||||||||||| ||||||||||| | ||||||||||| ||||||||||||
Sbjct 832 GTGAGAGACTTTGTGTCACCACCAAAGATGATTGTGATTCGTTCTTTCGATGTCAATAAA 891
Query 798 CCTGGCT 804
|||||||
Sbjct 892 CCTGGCT 898
Score = 621 bits (336), Expect = 5e-177
Identities = 489/563 (87%), Gaps = 10/563 (2%)
Strand=Plus/Plus
Query 813 GGTGTTTTGAAAGTAAACCAATTGATTGAGATCCGACCTGGTATCGTTAGCAAAGATGAG 872
|||||||||||||| |||||| ||||||| || ||||||||||| | |||||||||||
Sbjct 949 GGTGTTTTGAAAGTGAACCAACTGATTGAAATTAGACCTGGTATCACTGGCAAAGATGAG 1008
Query 873 CTTGGAAACCCAAGGTGCTCTCCCATTTACTCCCGTATCACTTCATTGTACGCAGAACAG 932
| ||||||| ||| ||| |||| |||||||| ||||| |||||| | ||||| ||||||
Sbjct 1009 CATGGAAACTCAAAATGCACTCCAATTTACTCGCGTATAACTTCACTATACGCGGAACAG 1068
Query 933 AACGAGCTTCAGTTTGCTGTGCCGGGAGGTCTGATCGGAGTTGGGACAACGATGGACCCT 992
|||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 1069 AACGAGCTTCAGTTTGCTGTACCGGGAGGTCTAATCGGAGTTGGAACAACCATGGACCCT 1128
Query 993 ACGCTCACGCGTGCTGATAGGTTGGTTGGTCAAGTGCTTGGTGAAATGGGTTCTCTCCCT 1052
||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 1129 ACGCTTACGCGTGCTGATAGGTTGGTTGGTCAAGTCCTTGGTGAAATGGGTACTCTCCCT 1188
Query 1053 GATGTCTATGTTGAGCTTGAGGTGAGTTTCCAGCTTCTGACCCGTCTTATTGGGGTGAGG 1112
|| |||| |||||||||||| || |||| |||||||||||| ||||| ||||| ||||||
Sbjct 1189 GACGTCTTTGTTGAGCTTGAAGTAAGTTACCAGCTTCTGACTCGTCTCATTGGAGTGAGG 1248
Query 1113 ACAAAGGAAAAAGAGAAGCAGATGAAAGTGGCAAAGCTAAGCAAGGGAGAGATACTGATG 1172
|||||||||||||||||||| ||||||||| ||||||||| ||| | ||||||| |||||
Sbjct 1249 ACAAAGGAAAAAGAGAAGCAAATGAAAGTGTCAAAGCTAACCAAAGAAGAGATATTGATG 1308
Query 1173 GTGAACATCGGGTCGATGTCGGCGGGAGCTAAGGTTCTAGGAGTGAAGAAAGATATGATG 1232
|||||||||||||| ||||| |||||||||||||| | ||||| |||||||||||| ||
Sbjct 1309 GTGAACATCGGGTCTATGTCTACGGGAGCTAAGGTTATTGGAGTCAAGAAAGATATGGTG 1368
Query 1233 AAAGTGCAACTGACGG-TGCCTGTCTGCACCAACATAGGAGAGAAGGTGGCTCTAAGCCG 1291
||| | ||||||||| | || || || |||| ||||||||||||||| ||| |||||||
Sbjct 1369 AAACTCCAACTGACGTCT-CCGGTGTGTACCACCATAGGAGAGAAGGTTGCTTTAAGCCG 1427
Query 1292 CCGTGTCGACAGGCATTGGCG-CTTGATTGGTC-GTGGTCAGATTGA-GGCTGGAACCAC 1348
|||||||| ||||||||||| || |||||| | ||||||||| | ||||||||||||
Sbjct 1428 ACGTGTCGATAGGCATTGGCGTCTA-ATTGGTAAG-GGTCAGATT-ATGGCTGGAACCAC 1484
Query 1349 CGTTCCC-GTCCCTCCTCCTCCT 1370
| | | || ||||||||||||
Sbjct 1485 CAT-CGATGTTCCTCCTCCTCCT 1506
> AT1G04170.1 | Symbols: EIF2 GAMMA | eukaryotic translation initiation
factor 2 gamma subunit | chr1:1096946-1099898 FORWARD
LENGTH=1793
Length=1793
Score = 850 bits (460), Expect = 0.0
Identities = 693/805 (86%), Gaps = 18/805 (2%)
Strand=Plus/Plus
Query 18 ATAATGGGGCGGAACAAGGGTTTAGCTGAACAAGATC-TAAGTAAGCTT-GATGTAAATG 75
|||||| | ||||||||||||| ||||| ||||||| ||| || || ||||||| ||
Sbjct 197 ATAATGTCGAGGAACAAGGGTTTGGCTGAGCAAGATCTTAA--AAAATTGGATGTAACTG 254
Query 76 AGCTACATCCTCTGTCTCCCGAGGTCATATCTCGCCAGGCAACCATAAACATAGGAACCA 135
|||||||||||||||||| |||||||| ||||||||||| || || || ||||||||||
Sbjct 255 TGCTACATCCTCTGTCTCCTGAGGTCATTTCTCGCCAGGCCACTATTAATATAGGAACCA 314
Query 136 TTGGACATGTTGCACACGGAAAGTCTACGGTTGTGAAAGCTATTTCTGGTGTGCAGACTG 195
|||| ||||| || || |||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 315 TTGGTCATGTCGCTCATGGAAAGTCCACTGTTGTTAAAGCTATTTCTGGTGTCCAGACTG 374
Query 196 TCCGTTTTAAGAATGAATTGGAGCGTAACATTACCATTAAACTTGGATATGCAAATGCCA 255
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 375 TCCGTTTTAAAAATGAATTGGAGCGTAACATTACCATTAAGCTTGGATATGCAAACGCCA 434
Query 256 AGATTTACCAATGTGAGGATAACAAGTGCCCTAGACCAATGTGCTACAAGTCTTATGGGA 315
|||||||| ||||||||||| | || |||||||||||||||||||||||| | || || |
Sbjct 435 AGATTTACAAATGTGAGGATGAGAAATGCCCTAGACCAATGTGCTACAAGGCCTACGGAA 494
Query 316 GTGGGAAA-GAAGACAAC-CCAAATTGCGATGTCCCTGGATTTGAGAACTGCAAGATGAA 373
|| ||||| |||||| || || ||||| |||||||| |||||||| |||| |||||||||
Sbjct 495 GT-GGAAAGGAAGAC-ACTCCCAATTGTGATGTCCCCGGATTTGAAAACTCCAAGATGAA 552
Query 374 GCTACTGAGGCATGTCTCCTTTGTGGATTGCCCGGGACATGATATTCTCATGGCCACAAT 433
||| ||||||||||||| || || ||||||||||| || |||||||||||||| |||||
Sbjct 553 ACTATTGAGGCATGTCTCATTCGTTGATTGCCCGGGTCACGATATTCTCATGGCAACAAT 612
Query 434 GCTCAATGGGGCCGCCATCATGGATGGTGCTCTACTTTTAATTGCTGCGAATG-AGGTCT 492
||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||| | | |
Sbjct 613 GCTTAATGGAGCAGCCATCATGGATGGTGCACTACTTTTAATCGCTGCAAATGAAACT-T 671
Query 493 GTCCTCAACCACAGACAG-CTGAACATCTTGCTTCCGTCGATATGATGCACCTTAAGCAT 551
|||| |||||||| || | |||||||||||||| |||| || || ||||| |||||||||
Sbjct 672 GTCCACAACCACAAAC-GTCTGAACATCTTGCTGCCGTTGAGATTATGCAACTTAAGCAT 730
Query 552 ATTATAATCCTTCAGAACAAGATTGATCTCATTCAAGAAAAAGCCGCCATCGAA-CAGCA 610
|| || ||||||||||||||||||||||| |||||||| || | ||||| || |||||
Sbjct 731 ATCATCATCCTTCAGAACAAGATTGATCTTATTCAAGAGAATGTTGCCAT-TAATCAGCA 789
Query 611 CACA-GCAATTCAGAGATTTATAACGAACACAAATGCCGAGGGTGCCCCTATAGTTCCTG 669
| | |||||||||| |||||||| |||||| ||| || | ||| || || || ||||
Sbjct 790 C-GAGGCAATTCAGAAATTTATAATGAACACTGTTGCTGATGCTGCTCCGATCGTCCCTG 848
Query 670 TCTCAGCACAACTGAAATACAACATTGATGCTG-TGTGCGAGTACATTGTCAAGAAGATT 728
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 849 TCTCAGCACAACTGAAATACAACATTGATG-TGGTGTGCGAGTACATTGTCAAGAAGATC 907
Query 729 CCAATCCCTAAAAGGGATTTTGTGTCACCGCCAAAGATGATAATCATTCGTTCTTTTGAT 788
||||||||| | ||| ||||||||||||| ||||| |||||| | ||||| |||||||||
Sbjct 908 CCAATCCCTGAGAGGAATTTTGTGTCACCCCCAAATATGATAGTGATTCGGTCTTTTGAT 967
Query 789 GTCAATAAACCTGGCTATGAGGTTG 813
||||| |||||||| ||||||||||
Sbjct 968 GTCAACAAACCTGGTTATGAGGTTG 992
> AT2G18720.1 | Symbols: | Translation elongation factor EF1A/initiation
factor IF2gamma family protein | chr2:8114920-8116811
REVERSE LENGTH=1465
Length=1465
Score = 782 bits (423), Expect = 0.0
Identities = 669/787 (85%), Gaps = 20/787 (3%)
Strand=Plus/Plus
Query 29 GAACAAGGGTTTAGCTGAACAAGATCTAAGTAAGCTTGATGTAAATGAGCTACATCCTCT 88
||||||||| ||||||||||||||||||||||| ||||||||| | |||| ||||||||
Sbjct 76 GAACAAGGGCTTAGCTGAACAAGATCTAAGTAAACTTGATGTAGCTCAGCTGCATCCTCT 135
Query 89 GTCTCCCGAGGTCATATCTCGCCAGGCAACCATAAACATAGGAACCATTGGACATGTTGC 148
||||| |||||||| ||||| || || ||||| ||||||||||||||||| ||||| ||
Sbjct 136 CTCTCCTGAGGTCATCTCTCGTCAAGCCACCATTAACATAGGAACCATTGGCCATGTCGC 195
Query 149 ACAC-GGAAAGTCTACGGTTGTGAAAGCTATTTCTGGTGTGCAGACTGTCCGTTTTAAGA 207
||| ||||| || || | |||||||| |||| |||||||| |||||| || ||||
Sbjct 196 TCACGGGAAA-TCGACAATCGTGAAAGCCGTTTCCGGTGTGCACACTGTCAAATTCAAGA 254
Query 208 ATGAATTGGAGCGTAACATTACCATTAAACTTGGATATGCAAATGCCAAGATTTACCAAT 267
||||||||||||||||||||||||||||||||| || ||||| || ||||||||| |||
Sbjct 255 GTGAATTGGAGCGTAACATTACCATTAAACTTGGTTACGCAAACGCAAAGATTTACAAAT 314
Query 268 GTGAGGATAACAAGTGCCCTAGACCAATGTGC-TACAAGTCTTAT-GGGAGTGGGAAAGA 325
|||| | || | |||||||||||| | || |||||||||| | |||||||| |||||
Sbjct 315 GTGA--A-AA-A--TGCCCTAGACCAGTA-GCCTACAAGTCTT-TCGGGAGTGGCAAAGA 366
Query 326 AGACAACCCAAATTGCGATGTCCCTGGATTTGAGAACTGCAAGATGAAGCTACTGAGGCA 385
||||||||||| ||| |||||| ||||| |||||| | ||||||||| ||||| || ||
Sbjct 367 AGACAACCCAAGTTGTGATGTCTCTGGACATGAGAAGTACAAGATGAAACTACTAAGACA 426
Query 386 TGTCTCCTTTGTGGATTGCCCGGGACATGATATTCTCATGGCCACAATGCTCAATGGGGC 445
|||||| ||||| |||||||||||||| ||||| || ||||| |||||||| ||||| ||
Sbjct 427 TGTCTCATTTGTTGATTGCCCGGGACACGATATCCTAATGGCGACAATGCTGAATGGAGC 486
Query 446 CGCCATCATGGATGGTGCTCTACTTTTAATTGCTGCGAATGAGGTC-TGTCCTCAACCAC 504
|| || |||||||||||| |||| | ||||||||||||||| | ||||| |||||||
Sbjct 487 AGCGATTATGGATGGTGCTTTACTAATCATTGCTGCGAATGAGA-CATGTCCACAACCAC 545
Query 505 AGACAGCTGAACATCTTGCTTCCGTCGATATGATGCACCTTAA-GCATATTATAATCCTT 563
| |||||||||||||||||||| || ||||||||||| ||||| | |||| |||||| ||
Sbjct 546 AAACAGCTGAACATCTTGCTTCTGTTGATATGATGCATCTTAAAG-ATATCATAATCATT 604
Query 564 CAGAACAAGATTGATCTCATTCAAGAAAAAGCCGCCATCGAACAGCACACAGCA-ATTCA 622
|||||||||||||||||||| |||||||| | || || |||||||| || | || ||
Sbjct 605 CAGAACAAGATTGATCTCATCCAAGAAAACGAGGCTATTAAACAGCACG-AGGACATCCA 663
Query 623 GAGATTTATAACGAACACAAATGCCGAGGGTGCCCCTATAGTTCCTGTCTCAGCACAACT 682
|||||||||||||||||| ||||| || ||||| |||||||||||||||||||| |||||
Sbjct 664 GAGATTTATAACGAACACGAATGCGGAAGGTGCTCCTATAGTTCCTGTCTCAGCGCAACT 723
Query 683 GAAATACAACATTGATGCTGTGTGCGAGTACATTGTCAAGAAGATTCCAATCCCTAAAAG 742
|||||||||||| |||| | |||| |||||||||||||||||||||||| ||||| ||
Sbjct 724 GAAATACAACATCGATGTTTTGTGTGAGTACATTGTCAAGAAGATTCCACTCCCTGTGAG 783
Query 743 GGATTTTGTGTCACCGCCAAAGA-TGATAATCATTCGTTCTTTTGATGTCAATAAACCTG 801
||||||||||||||| |||| || |||| | ||||||||||||||||||||||||||||
Sbjct 784 GGATTTTGTGTCACCTCCAA-GAATGATTGTGATTCGTTCTTTTGATGTCAATAAACCTG 842
Query 802 GCTATGA 808
||| |||
Sbjct 843 GCTCTGA 849
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68925348285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5