BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925072
Length=205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 159 7e-39
AT3G44620.2 | Symbols: | protein tyrosine phosphatases;protein... 104 3e-22
> AT1G27150.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:9429047-9432274 FORWARD LENGTH=1743
Length=1743
Score = 159 bits (86), Expect = 7e-39
Identities = 95/99 (96%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 87 TTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCA 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGAGTTCATGGAAGCA 781
Query 147 CTCGCAG-AATCGTGGCCTTCTTGCTCATCCTTCATGTA 184
||||||| || | ||||| ||||||||||||||||||||
Sbjct 782 CTCGCAGGAA-CTTGGCCCTCTTGCTCATCCTTCATGTA 819
> AT3G44620.2 | Symbols: | protein tyrosine phosphatases;protein
tyrosine phosphatases | chr3:16193829-16195833 FORWARD LENGTH=1229
Length=1229
Score = 104 bits (56), Expect = 3e-22
Identities = 66/71 (93%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 16 ATATCGTGAAGAAGAGAGGTCTCGATTCCAATTTCATCATTGATTCGGCTGGAACCATTG 75
||||||||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||
Sbjct 325 ATATCGTGAAGAAGAGAGGTCTCGATTCCAAATTCAACATTGATTCCGCTGGAACAATTG 384
Query 76 ATTATCATGAG 86
||||||| |||
Sbjct 385 ATTATCACGAG 395
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9154845882
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5