BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925084
Length=941
Score E
Sequences producing significant alignments: (Bits) Value
AT1G60040.1 | Symbols: AGL49 | AGAMOUS-like 49 | chr1:22119075-... 383 2e-105
AT1G59810.1 | Symbols: AGL50 | AGAMOUS-like 50 | chr1:22008604-... 363 2e-99
> AT1G60040.1 | Symbols: AGL49 | AGAMOUS-like 49 | chr1:22119075-22119929
REVERSE LENGTH=855
Length=855
Score = 383 bits (207), Expect = 2e-105
Identities = 336/396 (85%), Gaps = 18/396 (5%)
Strand=Plus/Plus
Query 22 ATGGCTCCTCGTGATAAAAAACCAAACAAGTCCTCCTCG--GAAGATGATGATTTGCAGA 79
|||||||||||| | || ||||| ||||||||| | | || |||| ||||||||| |
Sbjct 1 ATGGCTCCTCGTCAGAAGAAACCTAACAAGTCC-GAT-GATGATGATGGTGATTTGCATA 58
Query 80 GGAAGAAGAAACAGAGCTTTTTCAAACAGAGATTTCCTGG-TTTAAAGAAGAAAG-CTAC 137
| ||||||||||||||||||||||||||||||||| || ||| |||||||||| || |
Sbjct 59 -G--GAAGAAACAGAGCTTTTTCAAACAGAGATTTCCAGGCTTT-AAGAAGAAAGCCT-C 113
Query 138 AGAGCTCTCTGTTCTTTGCGGTAACTCTGTTGGTTTCATCTGTTACGGTCCCGACAACGA 197
||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 114 AGAGCTCTCTGTTCTCTGCGGCAACTCTGTCGGTTTCATCTGTTACGGTCCCGACAACGA 173
Query 198 TCTCCATGTTTGGCCTCAGCCTCATGATCATAACCCACAAACCCTAACAC-AGATCGTGG 256
||||||||||||||||||| |||| ||||||||||||||| ||||| || |||||||||
Sbjct 174 TCTCCATGTTTGGCCTCAGTCTCAAGATCATAACCCACAAGCCCTA-CATGAGATCGTGG 232
Query 257 CCAAGTTCAATGCGTTGAGTGATAACAAGAGGATGCATAACGCCTGCGATCTCTACGACT 316
||||||||||||| ||||||||| | | ||||| | || | || || |||||| | ||||
Sbjct 233 CCAAGTTCAATGCCTTGAGTGATGAGAGGAGGAAGAATCATGCATGTGATCTCAATGACT 292
Query 317 TCCCT-A--ATCTCAAGGGTTTATC-CGGTGACGAGTTGAGGAACCATCTCGTTAACCTT 372
||||| | ||||||||||||| || || ||| ||||| ||||| |||||| || |||||
Sbjct 293 TCCCTCATCATCTCAAGGGTTTGTCTCG-TGAGGAGTTAAGGAAGCATCTCCTTCACCTT 351
Query 373 GACTCTCACTTAGTCGGGGTCAAGCAACACAAGATA 408
|||||||| ||| | || |||| | |||| ||||||
Sbjct 352 GACTCTCAATTACTTGGAGTCAGGGAACAAAAGATA 387
> AT1G59810.1 | Symbols: AGL50 | AGAMOUS-like 50 | chr1:22008604-22009455
FORWARD LENGTH=852
Length=852
Score = 363 bits (196), Expect = 2e-99
Identities = 331/394 (84%), Gaps = 17/394 (4%)
Strand=Plus/Plus
Query 22 ATGGCTCCTCGTGATAAAAAACCAAACAAGTCCTCCTCGGAAGATGATGATTTGCAGAGG 81
|||||||||||| | || ||||| ||||||| || | || ||||||||||||| |
Sbjct 1 ATGGCTCCTCGTCAGAAGAAACCTAACAAGT-CTGAT--GATGATGATGATTTGC---GT 54
Query 82 AAGAAGAAACAGAGCTTTTTCAAACAGAGATTTCCTGG-TTTAAAGAAGAAAGC-TACAG 139
| ||||||||||||||||||||||||||||||||| || ||||| ||||||||| | | |
Sbjct 55 AGGAAGAAACAGAGCTTTTTCAAACAGAGATTTCCAGGCTTTAA-GAAGAAAGCCT-CTG 112
Query 140 AGCTCTCTGTTCTTTGCGGTAACTCTGTTGGTTTCATCTGTTACGGTCCCGACAACGATC 199
||||||||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||
Sbjct 113 AGCTCTCTGTTCTCTGCGGCAACTCTGTCGGTTTCATCTGTTACGGTCCCGACAGCGATC 172
Query 200 TCCATGTTTGGCCTCAGCCTCATGATCATAACCCACAAACCCTAACAC-AGATCGTGGCC 258
| ||||||||||||||| |||| ||||||||||||||| ||||| || ||||||| |||
Sbjct 173 TTCATGTTTGGCCTCAGTCTCAAGATCATAACCCACAAGCCCTA-CATGAGATCGTTGCC 231
Query 259 AAGTTCAATGCGTTGAGTGATAACAAGAGGATGCATAACGCCTGCGATCTCTACGACTTC 318
||||||||||| ||||||||| | | ||||| | || | || || |||||| | ||||||
Sbjct 232 AAGTTCAATGCCTTGAGTGATGAGAGGAGGAAGAATCATGCATGTGATCTCAATGACTTC 291
Query 319 CCT-A--ATCTCAAGGGTTTATC-CGGTGACGAGTTGAGGAACCATCTCGTTAACCTTGA 374
||| | ||||||||||||| || || ||| ||||| ||||| |||||| || |||||||
Sbjct 292 CCTCATCATCTCAAGGGTTTGTCTCG-TGAGGAGTTAAGGAAGCATCTCCTTCACCTTGA 350
Query 375 CTCTCACTTAGTCGGGGTCAAGCAACACAAGATA 408
|||||| ||| | || |||| | |||| ||||||
Sbjct 351 CTCTCAATTACTTGGAGTCAGGGAACAAAAGATA 384
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46014478652
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5