BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925089

Length=343
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G44110.1 | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:1586...   108    4e-23


> AT3G44110.1 | Symbols: ATJ3, ATJ | DNAJ homologue 3 | chr3:15868794-15871256 
REVERSE LENGTH=1781
Length=1781

 Score =  108 bits (58),  Expect = 4e-23
 Identities = 67/71 (94%), Gaps = 2/71 (3%)
 Strand=Plus/Plus

Query  1    TGAGGAT-TGTACCTT-GAACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC  58
            ||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  584  TGAGGATGTGTACCTTGGTACAATGAAGAAGCTTTCACTTTCTAGGAATGCTCTCTGCTC  643

Query  59   AAAGTGTAACG  69
             ||||||||||
Sbjct  644  TAAGTGTAACG  654



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16035411931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5