BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925090
Length=716
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964... 782 0.0
AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 621 3e-177
> AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964-22006172
FORWARD LENGTH=768
Length=768
Score = 782 bits (423), Expect = 0.0
Identities = 587/663 (89%), Gaps = 24/663 (4%)
Strand=Plus/Plus
Query 31 ACAGAGATTAAATTTGAGGAAGGATGGTCCTACATACATCAAGGTGTTACTAAGCTGATA 90
||||||||||||||||||| || ||||||| ||||||| |||||| |||| |||||||||
Sbjct 13 ACAGAGATTAAATTTGAGGTAGAATGGTCCAACATACAACAAGGTTTTACCAAGCTGATA 72
Query 91 AGAATTTTAGAAGGAGAGCCTGAACCAGCATTAGAATCTCA-GCAA-TAT-ATGAAT-CT 146
||||| ||||||||||| ||||||||||||| || ||| | || ||| ||| || |
Sbjct 73 AGAATGATAGAAGGAGAGTCTGAACCAGCATT-TAA--TCAGGAAATTATGATG-ATGAT 128
Query 147 GTACACGACTACCTA-CGT-TATGTG-CTCCAAGAACCCTAATTACTCACAACAGCTTTA 203
| | ||| |||| || ||| |||| | || |||||| || || |||||||||||
Sbjct 129 GCATACGGCTACTTACCGTATATGCGCCTACAAGAA-CC------CT--CAACAGCTTTA 179
Query 204 TGATAAGTATCGTGAAGTAATTGAAAATTATACAATCCAAACGGTGTTGCCGTCTTTAAG 263
|||||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 180 TGATAAGTATCGTGAATTAATTGAGAATTATGCAATCCAAACGGTGTTGCCATCTTTAAG 239
Query 264 GGAGAAGCATGATGAATGTATGCTAAGAGAGCTTGCTAAGAGGTGGAATAACCATAAATT 323
||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
Sbjct 240 GGAAAAGCATGATGAATGTATGCTACGAGAGCTTGCTAAGAGGTGGAATGCCCATAAACT 299
Query 324 TTTGGTTAGATTGTTTAGCAGATTCTTGCTTTATATAGACTCTTCCTTTGTTTCTAAAAG 383
|||||||||||| ||||||||| ||| | ||| ||||| ||||||| |||||||||
Sbjct 300 TTTGGTTAGATTATTTAGCAGAAGGTTGGTCTATTTAGACGATTCCTTTCTTTCTAAAAA 359
Query 384 AGGTCTTCCATCACTGAGGGAAGTTGGCTTGAATTGCTTCCACGACCTGGTTTATCGTGA 443
||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 360 AGGCCTTCCATCACTGAGGGAAGTTGGCTTGAATTGCTTCCGCGACCAGGTTTATCGTGA 419
Query 444 AATGCAGTCCATGGCCACAGAAGCTGTAATAGCACTTATTCATAAAGAGCGTGAGGGTGA 503
|||||||||||||||| |||||||| || ||||||||||||||||||| |||||||||||
Sbjct 420 AATGCAGTCCATGGCCGCAGAAGCTATATTAGCACTTATTCATAAAGAACGTGAGGGTGA 479
Query 504 ACAAATTGATAGAGAACTAGTGAGAAACGTAATAGATGTCTTTATTGAGAATGGGATGGG 563
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 480 ACAAATTGATAGAGAACTTGTGAGAAACGTAATAGATGTCTTTGTTGAGAATGGGATGGG 539
Query 564 AACTATGAAAAAATATGAAGAGGATTTTGAAAG-CTTCATGCTCCAAGATACTGCTTCTT 622
|||| | |||||||||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 540 AACTCTAAAAAAATATGAAGAGGATTTTGAAAGGCT-CATGCTTCAAGATACTGCTTCTT 598
Query 623 ACTATTCTAGCAAGGCGA-CAAGGTGGATCCAAGAGTATTCTTGTCTTGATTACACGCTA 681
|||||||||||||||| | ||||||||||||||||| | |||||||||||||||||||||
Sbjct 599 ACTATTCTAGCAAGGC-ATCAAGGTGGATCCAAGAGGAGTCTTGTCTTGATTACACGCTA 657
Query 682 AAG 684
|||
Sbjct 658 AAG 660
> AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385
FORWARD LENGTH=1125
Length=1125
Score = 621 bits (336), Expect = 3e-177
Identities = 564/670 (84%), Gaps = 32/670 (5%)
Strand=Plus/Plus
Query 35 AGATTAAATTTGAGGAAGGATGGTCCTACATACATCAAGGTGTTACTAAGCTGATAAGAA 94
|||||||||||||||||||||||||| |||| || ||||| |||| ||||||||||| |
Sbjct 32 AGATTAAATTTGAGGAAGGATGGTCCAACATTCAGAAAGGTATTACCAAGCTGATAAGGA 91
Query 95 TTTTAGAAGGAGAGCCTGAACCAGCATTAGAATCTCAG-CAATATATGAATCTGTACACG 153
|| |||||||||||||||||||| |||| || | || ||| | | || || ||||||
Sbjct 92 TTCTAGAAGGAGAGCCTGAACCAACATT-TTATTTTAGTGAATGTTTTAAACTTTACACG 150
Query 154 ACTACCTACGTTATGTG-CTCCAAGA-ACCCTAATTACTCACAACAGCTTTATGATAAGT 211
| || ||||| |||||| ||| ||| | || |||| ||||| ||||||||||| ||||
Sbjct 151 ATTATCTACGATATGTGTGTCC-AGAGATCC-GATTATTCACAGCAGCTTTATGAAAAGT 208
Query 212 ATCGTGAAGTAATTGAAAATTATACAATCCAAACGGTGTTGCCGTCTTTAAGGGAGAAGC 271
||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 209 ATCGTAAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCGTCTTTAAGGGAGAAGC 268
Query 272 ATGATGAATG-TATGCTAAGAGAGCTTGCTAAGAGGTGGAATAACCATAAATTTTTGGTT 330
|||||||| | ||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct 269 ATGATGAA-GATATGCTAAGAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTATGGTC 327
Query 331 AGATTGTTTAGC-AGATTCTTGC-TTTATATAGACTCTTC-CTTTGTT--TC-TA-AAAG 383
| || ||| ||| || ||||| | ||||||| ||| | || ||| ||| || | |||
Sbjct 328 AAATGGTTAAGCAAG-TTCTT-CGTTTATATTGAC-CGTCACTTGGTTCGTCGGAGTAAG 384
Query 384 AGGT-C--TTCCATCACTGAG-GGAAGTTGGCTTGA-ATTGCTTCCACGACCTGGTTTAT 438
| | | |||||||||| || |||||||| |||| | ||||| | ||||||||||||
Sbjct 385 A-TTCCAATTCCATCACT-AGATGAAGTTGGATTGACA-TGCTTTCTTGACCTGGTTTAT 441
Query 439 CGTGAAATGCAGTCCATGGCCACAGAAGCTGTAATAGCACTTATTCATAAAGAGCGTGAG 498
|||| |||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 442 TGTGAGATGCAGTCCACGGCCAAAGAAGTTGTAATAGCACTTATTCATAAAGAACGTGAG 501
Query 499 GGTGAACAAATTGATAGAGAACTAGTG-AGAAACGTAATAGATGTCTTTATTGAGAATGG 557
|| ||||| || ||||| | ||||||| || |||||| ||||| ||| | | ||||||||
Sbjct 502 GGCGAACAGATAGATAGGGCACTAGTGAAG-AACGTATTAGATATCTATGTGGAGAATGG 560
Query 558 GATGGGAA-CTATGAAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTCCAAGATACTG 616
|||||||| || || |||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 561 GATGGGAACCT-TGGAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATACTG 619
Query 617 CTTCTTACTATTCTAGCAAGGCGACAAGGTGGATCCAAG-AGTATTCTTGTCTTGATTAC 675
|||||||||||||| |||||||| ||||||||| || || || ||||||||| |||||||
Sbjct 620 CTTCTTACTATTCTCGCAAGGCGTCAAGGTGGA-CCGAGGAGGATTCTTGTCCTGATTAC 678
Query 676 ACGCTAAAGG 685
| | ||||||
Sbjct 679 ATGATAAAGG 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34711795577
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5