BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925091
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 566 1e-160
AT1G02980.1 | Symbols: CUL2, ATCUL2 | cullin 2 | chr1:677869-68... 320 1e-86
> AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385
FORWARD LENGTH=1125
Length=1125
Score = 566 bits (306), Expect = 1e-160
Identities = 555/671 (83%), Gaps = 33/671 (5%)
Strand=Plus/Plus
Query 36 GATTAAATTTGAGGAAGGATGGTCCTAC-TTGCAGAAAGGTATTACC-AGACTGATAA-G 92
||||||||||||||||||||||||| || || ||||||||||||||| || ||||||| |
Sbjct 33 GATTAAATTTGAGGAAGGATGGTCCAACATT-CAGAAAGGTATTACCAAG-CTGATAAGG 90
Query 93 ACATCTAGAAGGAGAGCCTGAA-CAGGCACTTAAAACTCAG-CATTGTATGGAACTTTAC 150
| ||||||||||||||||||| || || || | | || | ||| | ||||||||
Sbjct 91 A-TTCTAGAAGGAGAGCCTGAACCA-ACA-TTTTATTTTAGTGAATGTTTTAAACTTTAC 147
Query 151 AAC-ACTGCCTACCATATGTGCACCCAGA-ATCCTAATTACTCACAACAGCTTTACGATA 208
|| | | |||| ||||||| ||||| |||| |||| ||||| |||||||| || |
Sbjct 148 -ACGATTATCTACGATATGTGTGTCCAGAGATCC-GATTATTCACAGCAGCTTTATGAAA 205
Query 209 AGTATCGCGAAGTGATTGAAGATTATACTATGCAAACGGTGCTACCATCTTTAAGGGAGA 268
||||||| |||| ||||||||||||||||| ||||||||| | || |||||||||||||
Sbjct 206 AGTATCGTAAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCGTCTTTAAGGGAGA 265
Query 269 AGCATGATGAATATATGTTGAGAGAGCTTGTTAAGAGGTGGAATAACCATAAACTTATGG 328
||||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 266 AGCATGATGAAGATATGCTAAGAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTATGG 325
Query 329 TTAGACAGTT-AGCCATA-ATCTTTGGTTATCTTGAAGGAT-ACTTTTTTCGTTGGA--A 383
| | | ||| || || | |||| | |||| |||| | | |||| ||||| ||| |
Sbjct 326 TCAAATGGTTAAG-CA-AGTTCTTCGTTTATATTGACCG-TCACTTGGTTCGTCGGAGTA 382
Query 384 ACGCA-T-AAATT-CATCACTGAG-GGAAGTTGGCTTGATATACTTCCACGACCTGGTTT 439
| | | | |||| ||||||| || |||||||| |||| || ||| | ||||||||||
Sbjct 383 A-G-ATTCCAATTCCATCACT-AGATGAAGTTGGATTGACATGCTTTCTTGACCTGGTTT 439
Query 440 ACCATGAGATGCATTCCTCGGCCACAGAAGCTGTAATAGCACTTATTGATAAAGAACGTG 499
| ||||||||| ||| |||||| ||||| |||||||||||||||| ||||||||||||
Sbjct 440 ATTGTGAGATGCAGTCCACGGCCAAAGAAGTTGTAATAGCACTTATTCATAAAGAACGTG 499
Query 500 AGGGCGAACAAATTGATAGAGAACTAGTG-AGAAATGTAATACATGTCTTTGTTGAGAAT 558
|||||||||| || ||||| | ||||||| || || ||| || || ||| ||| ||||||
Sbjct 500 AGGGCGAACAGATAGATAGGGCACTAGTGAAG-AACGTATTAGATATCTATGTGGAGAAT 558
Query 559 GGGATGGG-ATCTATaaaaaaaTATGAAGAGGATTTTGAAAGCTTCATGCTTGAAGATAC 617
|||||||| | || | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 559 GGGATGGGAACCT-TGGAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATAC 617
Query 618 TGCTTCTTACTATTCCCGCAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTCTTGATTA 677
||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 618 TGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGGATTCTTGTCCTGATTA 677
Query 678 CACGATAAAGG 688
|| ||||||||
Sbjct 678 CATGATAAAGG 688
> AT1G02980.1 | Symbols: CUL2, ATCUL2 | cullin 2 | chr1:677869-681310
FORWARD LENGTH=2327
Length=2327
Score = 320 bits (173), Expect = 1e-86
Identities = 440/567 (78%), Gaps = 25/567 (4%)
Strand=Plus/Plus
Query 137 GTATGGAACTTTACAAC-ACTG-CCTACCATATGTGCACCCAG-AA--TCCT-A--ATTA 188
||||| | || ||| || |||| || || || |||| |||||| || |||| | ||||
Sbjct 119 GTATGCAGCTGTAC-ACGACTGTCC-ACAATCTGTGTACCCAGAAACCTCCTAATGATTA 176
Query 189 CTCACAACAGCTTTACGATAAGTATCGCGAAGTGAT-TGAAGATTATACTATGCAAACGG 247
|||||| ||| | || ||| |||| | | ||| || || ||||| | || ||||| |
Sbjct 177 CTCACAGCAGATCTATGATCGGTATGGTGGAGT-ATATGTTGATTACAATAAACAAACTG 235
Query 248 TGCTACCATCTTTAAGGGAGAAGCATGATGAATATATGTTGAGAGAGCTTGTTAAGAGGT 307
|| | || || || | |||||||||| |||||||||||||||||||||||||||||| |
Sbjct 236 TGTTGCCGGCTATACGTGAGAAGCATGGTGAATATATGTTGAGAGAGCTTGTTAAGAGAT 295
Query 308 GGAATAACCATAAACTTATGGTTAGACAGTTAGCCATAAT-CTTTGGTTATCTTGAAGGA 366
|| ||||| ||| || | |||||| |||| || | | ||| | |||||||| |
Sbjct 296 GGGCCAACCAGAAAATTCTTGTTAGATGGTTATCCC-ACTTCTTCGAATATCTTGACCG- 353
Query 367 TACTTTT-T--TCGTTGGAAACGCATAAATTCATCACTGAGGGAAGTTGGCTTGATATAC 423
| |||| | |||| || | | | | || ||||||| | |||||||| |||| |
Sbjct 354 T--TTTTATACTCGTCGGGGGT-C-TCA-TCCAACACTGAGTGCTGTTGGCTTCATATCC 408
Query 424 TTCCACGACCTGGTTTACCATGAGATGCATTCCTCGGCCACAGAAGCTGTAATAGCACTT 483
|||| |||||||||||| || ||| | || ||| ||||| ||| |||||| ||||||||
Sbjct 409 TTCCGCGACCTGGTTTATCAAGAGTTACAGTCCAAGGCCAAAGACGCTGTACTAGCACTT 468
Query 484 ATTGATAAAGAACGTGAGGGCGAACAAATTGATAGAGAACTAGTGAGAAATGTAATACAT 543
||| |||||||||| ||||||||||| |||||||||| |||| ||| ||| |||||| ||
Sbjct 469 ATTCATAAAGAACGCGAGGGCGAACAGATTGATAGAGCACTATTGAAAAACGTAATAGAT 528
Query 544 GTCT-TTGTTGAGAATGGGATGGGATCTATaaaaaaaTATGAAGAGGATTTTGAAAGCTT 602
|||| |||| | ||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 529 GTCTATTGTGG-GAATGGGATGGGAGAGCTGGTTAAATACGAAGAGGATTTTGAAAGCTT 587
Query 603 CATGCTTGAAGATACTGCTTCTTACTATTCCCGCAAGGCGTCAAGGTGGATCGAGGAGGA 662
| ||||||||||| |||| |||||||| || ||||| || |||||||||| | ||||| |
Sbjct 588 CTTGCTTGAAGATTCTGCATCTTACTACTCTCGCAACGCCTCAAGGTGGAACCAGGAGAA 647
Query 663 TTCTTGTCTTGATTACACGATAAAGGC 689
|||||||| |||||||| |||||||||
Sbjct 648 TTCTTGTCCTGATTACATGATAAAGGC 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34862498018
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5