BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg925091 Length=719 Score E Sequences producing significant alignments: (Bits) Value AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 566 1e-160 AT1G02980.1 | Symbols: CUL2, ATCUL2 | cullin 2 | chr1:677869-68... 320 1e-86 > AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385 FORWARD LENGTH=1125 Length=1125 Score = 566 bits (306), Expect = 1e-160 Identities = 555/671 (83%), Gaps = 33/671 (5%) Strand=Plus/Plus Query 36 GATTAAATTTGAGGAAGGATGGTCCTAC-TTGCAGAAAGGTATTACC-AGACTGATAA-G 92 ||||||||||||||||||||||||| || || ||||||||||||||| || ||||||| | Sbjct 33 GATTAAATTTGAGGAAGGATGGTCCAACATT-CAGAAAGGTATTACCAAG-CTGATAAGG 90 Query 93 ACATCTAGAAGGAGAGCCTGAA-CAGGCACTTAAAACTCAG-CATTGTATGGAACTTTAC 150 | ||||||||||||||||||| || || || | | || | ||| | |||||||| Sbjct 91 A-TTCTAGAAGGAGAGCCTGAACCA-ACA-TTTTATTTTAGTGAATGTTTTAAACTTTAC 147 Query 151 AAC-ACTGCCTACCATATGTGCACCCAGA-ATCCTAATTACTCACAACAGCTTTACGATA 208 || | | |||| ||||||| ||||| |||| |||| ||||| |||||||| || | Sbjct 148 -ACGATTATCTACGATATGTGTGTCCAGAGATCC-GATTATTCACAGCAGCTTTATGAAA 205 Query 209 AGTATCGCGAAGTGATTGAAGATTATACTATGCAAACGGTGCTACCATCTTTAAGGGAGA 268 ||||||| |||| ||||||||||||||||| ||||||||| | || ||||||||||||| Sbjct 206 AGTATCGTAAAGTAATTGAAGATTATACTATCCAAACGGTGTTGCCGTCTTTAAGGGAGA 265 Query 269 AGCATGATGAATATATGTTGAGAGAGCTTGTTAAGAGGTGGAATAACCATAAACTTATGG 328 ||||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||| Sbjct 266 AGCATGATGAAGATATGCTAAGAGAGCTTGTTAAGAGGTGGAATAACCATAAAATTATGG 325 Query 329 TTAGACAGTT-AGCCATA-ATCTTTGGTTATCTTGAAGGAT-ACTTTTTTCGTTGGA--A 383 | | | ||| || || | |||| | |||| |||| | | |||| ||||| ||| | Sbjct 326 TCAAATGGTTAAG-CA-AGTTCTTCGTTTATATTGACCG-TCACTTGGTTCGTCGGAGTA 382 Query 384 ACGCA-T-AAATT-CATCACTGAG-GGAAGTTGGCTTGATATACTTCCACGACCTGGTTT 439 | | | | |||| ||||||| || |||||||| |||| || ||| | |||||||||| Sbjct 383 A-G-ATTCCAATTCCATCACT-AGATGAAGTTGGATTGACATGCTTTCTTGACCTGGTTT 439 Query 440 ACCATGAGATGCATTCCTCGGCCACAGAAGCTGTAATAGCACTTATTGATAAAGAACGTG 499 | ||||||||| ||| |||||| ||||| |||||||||||||||| |||||||||||| Sbjct 440 ATTGTGAGATGCAGTCCACGGCCAAAGAAGTTGTAATAGCACTTATTCATAAAGAACGTG 499 Query 500 AGGGCGAACAAATTGATAGAGAACTAGTG-AGAAATGTAATACATGTCTTTGTTGAGAAT 558 |||||||||| || ||||| | ||||||| || || ||| || || ||| ||| |||||| Sbjct 500 AGGGCGAACAGATAGATAGGGCACTAGTGAAG-AACGTATTAGATATCTATGTGGAGAAT 558 Query 559 GGGATGGG-ATCTATaaaaaaaTATGAAGAGGATTTTGAAAGCTTCATGCTTGAAGATAC 617 |||||||| | || | ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 559 GGGATGGGAACCT-TGGAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAGATAC 617 Query 618 TGCTTCTTACTATTCCCGCAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTCTTGATTA 677 ||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 618 TGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGGATTCTTGTCCTGATTA 677 Query 678 CACGATAAAGG 688 || |||||||| Sbjct 678 CATGATAAAGG 688 > AT1G02980.1 | Symbols: CUL2, ATCUL2 | cullin 2 | chr1:677869-681310 FORWARD LENGTH=2327 Length=2327 Score = 320 bits (173), Expect = 1e-86 Identities = 440/567 (78%), Gaps = 25/567 (4%) Strand=Plus/Plus Query 137 GTATGGAACTTTACAAC-ACTG-CCTACCATATGTGCACCCAG-AA--TCCT-A--ATTA 188 ||||| | || ||| || |||| || || || |||| |||||| || |||| | |||| Sbjct 119 GTATGCAGCTGTAC-ACGACTGTCC-ACAATCTGTGTACCCAGAAACCTCCTAATGATTA 176 Query 189 CTCACAACAGCTTTACGATAAGTATCGCGAAGTGAT-TGAAGATTATACTATGCAAACGG 247 |||||| ||| | || ||| |||| | | ||| || || ||||| | || ||||| | Sbjct 177 CTCACAGCAGATCTATGATCGGTATGGTGGAGT-ATATGTTGATTACAATAAACAAACTG 235 Query 248 TGCTACCATCTTTAAGGGAGAAGCATGATGAATATATGTTGAGAGAGCTTGTTAAGAGGT 307 || | || || || | |||||||||| |||||||||||||||||||||||||||||| | Sbjct 236 TGTTGCCGGCTATACGTGAGAAGCATGGTGAATATATGTTGAGAGAGCTTGTTAAGAGAT 295 Query 308 GGAATAACCATAAACTTATGGTTAGACAGTTAGCCATAAT-CTTTGGTTATCTTGAAGGA 366 || ||||| ||| || | |||||| |||| || | | ||| | |||||||| | Sbjct 296 GGGCCAACCAGAAAATTCTTGTTAGATGGTTATCCC-ACTTCTTCGAATATCTTGACCG- 353 Query 367 TACTTTT-T--TCGTTGGAAACGCATAAATTCATCACTGAGGGAAGTTGGCTTGATATAC 423 | |||| | |||| || | | | | || ||||||| | |||||||| |||| | Sbjct 354 T--TTTTATACTCGTCGGGGGT-C-TCA-TCCAACACTGAGTGCTGTTGGCTTCATATCC 408 Query 424 TTCCACGACCTGGTTTACCATGAGATGCATTCCTCGGCCACAGAAGCTGTAATAGCACTT 483 |||| |||||||||||| || ||| | || ||| ||||| ||| |||||| |||||||| Sbjct 409 TTCCGCGACCTGGTTTATCAAGAGTTACAGTCCAAGGCCAAAGACGCTGTACTAGCACTT 468 Query 484 ATTGATAAAGAACGTGAGGGCGAACAAATTGATAGAGAACTAGTGAGAAATGTAATACAT 543 ||| |||||||||| ||||||||||| |||||||||| |||| ||| ||| |||||| || Sbjct 469 ATTCATAAAGAACGCGAGGGCGAACAGATTGATAGAGCACTATTGAAAAACGTAATAGAT 528 Query 544 GTCT-TTGTTGAGAATGGGATGGGATCTATaaaaaaaTATGAAGAGGATTTTGAAAGCTT 602 |||| |||| | ||||||||||||| | ||||| |||||||||||||||||||| Sbjct 529 GTCTATTGTGG-GAATGGGATGGGAGAGCTGGTTAAATACGAAGAGGATTTTGAAAGCTT 587 Query 603 CATGCTTGAAGATACTGCTTCTTACTATTCCCGCAAGGCGTCAAGGTGGATCGAGGAGGA 662 | ||||||||||| |||| |||||||| || ||||| || |||||||||| | ||||| | Sbjct 588 CTTGCTTGAAGATTCTGCATCTTACTACTCTCGCAACGCCTCAAGGTGGAACCAGGAGAA 647 Query 663 TTCTTGTCTTGATTACACGATAAAGGC 689 |||||||| |||||||| ||||||||| Sbjct 648 TTCTTGTCCTGATTACATGATAAAGGC 674 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34862498018 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5