BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925097
Length=1200
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504... 876 0.0
AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964... 291 1e-77
> AT1G59790.1 | Symbols: | Cullin family protein | chr1:22001504-22003385
FORWARD LENGTH=1125
Length=1125
Score = 876 bits (474), Expect = 0.0
Identities = 589/642 (92%), Gaps = 17/642 (3%)
Strand=Plus/Plus
Query 526 GGTTTATCATGAGATGCAGTCCACAGCCACAA-AAGTTGTATTAGCACTTATTCATAAAG 584
||||||| ||||||||||||||| |||| || |||||||| ||||||||||||||||||
Sbjct 435 GGTTTATTGTGAGATGCAGTCCACGGCCA-AAGAAGTTGTAATAGCACTTATTCATAAAG 493
Query 585 AACGTGAGGGCGAACAGATTGATAGGGCACTAATGAAGAACGTATTAAATATCTACGTGG 644
||||||||||||||||||| |||||||||||| |||||||||||||| ||||||| ||||
Sbjct 494 AACGTGAGGGCGAACAGATAGATAGGGCACTAGTGAAGAACGTATTAGATATCTATGTGG 553
Query 645 AGAATGGGATGGGAA-C--------ATATGAAGAGGATTTTGAAAGCTTCATGCTTGAAG 695
||||||||||||||| | ||||||||||||||||||||||||||||||| |||
Sbjct 554 AGAATGGGATGGGAACCTTGGAAAAATATGAAGAGGATTTTGAAAGCTTCATGCTTCAAG 613
Query 696 ATACTGCTTCTTACTATTCTCGTAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTTCTC 755
|||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||
Sbjct 614 ATACTGCTTCTTACTATTCTCGCAAGGCGTCAAGGTGGACCGAGGAGGATTCTTGTCCTG 673
Query 756 ATTACATGCTAAAGGTTGAAGAGTGTCTAAAGAGGGAGAGGGAGAGAGTCACTCACTATC 815
|||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 674 ATTACATGATAAAGGTTGAGGAGTGTCTAAAGATGGAGAGGGAGAGAGTCACTCACTATC 733
Query 816 TCCATTCAAGCACTGAACCCAAAGTAGTTGAGAAAATACAAAATGAATTGTTGGTAATGG 875
||||||||| || ||||||||| ||||||||||||||||||| ||||||||||| ||||
Sbjct 734 TCCATTCAATTACCGAACCCAAACTAGTTGAGAAAATACAAAACGAATTGTTGGTTATGG 793
Query 876 TTGCAAAAAACCGTCTAGAAAATGAGCATTCAGGGTGCT-GTGCATTGCTAAGAGATGAC 934
|| |||||||||| |||||||||||||| ||||||| | ||||||||||||||||||||
Sbjct 794 TTACAAAAAACCGCCTAGAAAATGAGCACTCAGGGT-TTAGTGCATTGCTAAGAGATGAC 852
Query 935 AAGAAGAATGATCTCTCTAGGATATACAGTCTTTATCATCCAATCCCTCAA-AGGTTGGG 993
||||||||||||||||||||||||||| ||||||||| |||||||||| || ||||||||
Sbjct 853 AAGAAGAATGATCTCTCTAGGATATACCGTCTTTATCTTCCAATCCCT-AAGAGGTTGGG 911
Query 994 ACGTGTTGCAGACTTATTCAAGAAGCATATTACTGAAGAGAGGAA-TGCTCTTATCAAAC 1052
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 912 ACGTGTTGCAGACTTATTCAAGAAGCATATTACTGAAGAG-GGAAATGCCCTTATCAAAC 970
Query 1053 AAGCTGACGACGCAACCACTAATCAACTACTAATTGAGCTACACAATAAGTACATGGTCT 1112
||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 971 AAGCTGACGACAAAACTACTAATCAACTACTAATTGAGCTACACAATAAGTTCATTGTCT 1030
Query 1113 ATGTCACCGAGTGTTTTCAGAACCACACCCTCTTCCATAAGG 1154
|||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1031 ATGTCATCGAGTGTTTTCAAAACCACACCCTCTTCCATAAGG 1072
Score = 534 bits (289), Expect = 6e-151
Identities = 389/437 (89%), Gaps = 8/437 (2%)
Strand=Plus/Plus
Query 14 TCGTGAATAATGGCCCAACACAGACATATTGAATTTGAGCAAGGATGGTCCAACATTCAG 73
||| ||| |||| ||| || |||||| ||| |||||||| ||||||||||||||||||||
Sbjct 7 TCGAGAAGAATGTCCCGACCCAGACAGATTAAATTTGAGGAAGGATGGTCCAACATTCAG 66
Query 74 AAAGGTATTACCAAGCTGATAAGGATTCTAGAAGGAGAGCCTGAACCAGA-ATTTCATTC 132
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||
Sbjct 67 AAAGGTATTACCAAGCTGATAAGGATTCTAGAAGGAGAGCCTGAACCA-ACATTTTATTT 125
Query 133 T-GATGAATATATGAATA-TTTACACGATTATCTACGATATGTGCAACCAGAGATCCGAT 190
| | ||||| | | || | ||||||||||||||||||||||||| |||||||||||||
Sbjct 126 TAG-TGAATGTTTTAA-ACTTTACACGATTATCTACGATATGTGTGTCCAGAGATCCGAT 183
Query 191 TACTCACAGCAGCTATATGATAAGTATCGTAAAGTAATTGAAGATTATATTATACAAACG 250
|| ||||||||||| ||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 184 TATTCACAGCAGCTTTATGAAAAGTATCGTAAAGTAATTGAAGATTATACTATCCAAACG 243
Query 251 GTGTCCCCGTCTTTAAGGGAGAAGCATGATGAAGATATGCTAAGAGATCTTGTTAAGAGG 310
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 244 GTGTTGCCGTCTTTAAGGGAGAAGCATGATGAAGATATGCTAAGAGAGCTTGTTAAGAGG 303
Query 311 TGGGATAACCATAAAGTTCTGGTTAGATGGTTATCCA-GATTATTCCATTATGTTGACCG 369
||| ||||||||||| || |||| | ||||||| || | || ||| |||| |||||||
Sbjct 304 TGGAATAACCATAAAATTATGGTCAAATGGTTAAGCAAG-TTCTTCGTTTATATTGACCG 362
Query 370 ACACTTTGTTCTTCGGAGTAAGATTCCAATTCCAACACTAGATGAAGTTGGATTGTCATG 429
||||| |||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 363 TCACTTGGTTCGTCGGAGTAAGATTCCAATTCCATCACTAGATGAAGTTGGATTGACATG 422
Query 430 CTTTCTTGACCTGGTTT 446
|||||||||||||||||
Sbjct 423 CTTTCTTGACCTGGTTT 439
> AT1G59800.1 | Symbols: | Cullin family protein | chr1:22004964-22006172
FORWARD LENGTH=768
Length=768
Score = 291 bits (157), Expect = 1e-77
Identities = 280/337 (83%), Gaps = 17/337 (5%)
Strand=Plus/Plus
Query 524 CAGGTTTATCATGAGATGCAGTCCACAGCCACAAAAGTTGTATTAGCACTTATTCATAAA 583
|||||||||| ||| |||||||||| ||| || ||| | ||||||||||||||||||||
Sbjct 406 CAGGTTTATCGTGAAATGCAGTCCATGGCCGCAGAAGCTATATTAGCACTTATTCATAAA 465
Query 584 GAACGTGAGGGCGAACAGATTGATAGGGCACTAATGAAGAA-CGTATTAAATATCTACGT 642
||||||||||| ||||| |||||||| | ||| ||| ||| |||| || || ||| ||
Sbjct 466 GAACGTGAGGGTGAACAAATTGATAGAGAACTTGTGA-GAAACGTAATAGATGTCTTTGT 524
Query 643 GGAGAATGGGATGGGAAC---A------TATGAAGAGGATTTTGAAAG-CTTCATGCTTG 692
||||||||||||||||| | |||||||||||||||||||| || |||||||
Sbjct 525 TGAGAATGGGATGGGAACTCTAAAAAAATATGAAGAGGATTTTGAAAGGCT-CATGCTTC 583
Query 693 AAGATACTGCTTCTTACTATTCTCGTAAGGCGTCAAGGTGGATCGAGGAGGATTCTTGTT 752
||||||||||||||||||||||| | ||||| |||||||||||| | ||||| ||||||
Sbjct 584 AAGATACTGCTTCTTACTATTCTAGCAAGGCATCAAGGTGGATCCAAGAGGAGTCTTGT- 642
Query 753 CTC-ATTACATGCTAAAGGTTGAAGAGTGTCTA-AAGAGGGAGAGGGAGAGAGTCACTCA 810
|| |||||| ||||||| | || ||||| || || |||||||||||||||||||||||
Sbjct 643 CTTGATTACACGCTAAAGCCTCAACAGTGTTTACAA-AGGGAGAGGGAGAGAGTCACTCA 701
Query 811 CTATCTCCATTCAAGCACTGAACCCAAAGTAGTTGAG 847
||| || ||| ||| ||||||||||||| || |||||
Sbjct 702 CTACCTTCATCCAACCACTGAACCCAAACTATTTGAG 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58935439830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5