BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925103
Length=311
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32835.1 | Symbols: RALFL16 | RALF-like 16 | chr2:13931166-1... 311 3e-84
> AT2G32835.1 | Symbols: RALFL16 | RALF-like 16 | chr2:13931166-13931453
REVERSE LENGTH=288
Length=288
Score = 311 bits (168), Expect = 3e-84
Identities = 215/236 (91%), Gaps = 10/236 (4%)
Strand=Plus/Plus
Query 22 ATGGTTGCATAC-ATGAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGATTATATT 80
|||||||||||| | ||||||||||||||||||||||||||||||||||||| || || |
Sbjct 1 ATGGTTGCATACGA-GAAGAGTCCTATTGTTTTTCTATTTGCTACAATGATGCTTGTAAT 59
Query 81 ATTTATGTTTTGTGGAAGTGGAGAAGCAAGAACATTAGGGTACGGATCTGTACTTGGAAA 140
||| |||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 60 GTTTTTGTTTTGTGGAAGTGGAGAAGCAAGAACATTAGGGTACGGATCT--A-TT--AAA 114
Query 141 --AGACAAAATTCCGGCATGTGGCTACAAAAACCCCAATTCATGTGTCAAACAACCAGTT 198
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 115 GGAGACCGAATTCCGGCATGTGGCTATAAAAACCCCAATTCATGTGTCAAACAACCAGTT 174
Query 199 AACCATTACCATAGAGGTTGTGAAAAACTTAACAGGTGTGGTCGTGATGCTGACTC 254
||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||
Sbjct 175 AACCATTACCATAGAGGTTGTGAAAAAATTACCAGGTGTGCTCGTGATGCTG-CTC 229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 14426843963
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5