BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925104
Length=644
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32800.1 | Symbols: AP4.3A | protein kinase family protein |... 357 7e-98
> AT2G32800.1 | Symbols: AP4.3A | protein kinase family protein
| chr2:13916452-13919179 FORWARD LENGTH=2728
Length=2728
Score = 357 bits (193), Expect = 7e-98
Identities = 275/313 (88%), Gaps = 11/313 (4%)
Strand=Plus/Plus
Query 334 CTT-ATAAAGTTATGAATCCGCGGCTCTGTGGATTTGCATTGGCCGAGTTTTTGTCTAGA 392
||| ||| || ||||||||||||||| || ||||| |||||||| |||||||||||||||
Sbjct 2028 CTTGATAGAGATATGAATCCGCGGCTTTGCGGATTCGCATTGGCAGAGTTTTTGTCTAGA 2087
Query 393 AACGATAAGGCTCATTCAAGCTACAAAAAAGGAAGGATCCGCTCAAGGGATCTTCGGTTA 452
||||| |||||||| ||||||| |||||||| ||||||| ||||||||||| || |||||
Sbjct 2088 AACGACAAGGCTCA-TCAAGCTGCAAAAAAGAAAGGATCTGCTCAAGGGATTTTTGGTTA 2146
Query 453 TATGGCACCAGAATACATGGAATCCGGCGAGG-TACAACCATGACGGATGTATACAGCTT 511
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 2147 TATGGCACCAGAATACATGGAATCCGGCGAGGCTACAACCATGGCGGATGTATACAGCTT 2206
Query 512 CGGCATGGTGGTGCTGGAGATGGTTATGGGGCATCCCTTAGTGGATTACATGAGGAAAAA 571
||| |||| ||||| |||||||||| |||||| || ||||||||||| |||||||||
Sbjct 2207 TGGCGTGGTAGTGCTCGAGATGGTTACGGGGCAGCCAGCAGTGGATTACAAGAGGAAAAA 2266
Query 572 CGAAGATGCTCTTTTGGTGTTGACTGTTGAGAATCCGCGAAGTAGTTGGTGACCGGaaaa 631
|||||||||||| |||||||| | | | | ||||||||||||||||| |||| ||||
Sbjct 2267 AGAAGATGCTCTTATGGTGTTG-C-G---A-A-TCCGCGAAGTAGTTGGTAACCG-AAAA 2318
Query 632 aaaCTCTTCGAGG 644
|||||||| ||||
Sbjct 2319 AAACTCTTGGAGG 2331
Score = 233 bits (126), Expect = 1e-60
Identities = 166/185 (90%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 154 GCCGGCTTCGACATCGTAACCTTGTTATGC-CCAGTGGGTGGTGCACTGAACATGGAGAA 212
||||||||||||| |||||||| || |||| || |||| |||||||| ||||| ||||||
Sbjct 1771 GCCGGCTTCGACACCGTAACCTAGTAATGCTCC-GTGGTTGGTGCACCGAACACGGAGAA 1829
Query 213 ATGCTTGTAGCGTACGATTATTCCGCGAATCGTAAGGTAAGCCATCTTCTTTTCCATAAC 272
|||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 1830 ATGCTTGTAGTGTACGATTATTCCGCGAATCGTAAGCTAAGTCATCTTCTTTTCCATAAT 1889
Query 273 CGTATTTC-GAGAAACTCTGTTTTGCGATGGAAAAGTCGGTACAACGAGATTAAATCGCT 331
| ||| | | |||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1890 CATATACCTG-GAAACTCTGTTTTGCGATGGAAAAGTCGGTACAACGTGATCAAATCGCT 1948
Query 332 TGCTT 336
|||||
Sbjct 1949 TGCTT 1953
Score = 195 bits (105), Expect = 6e-49
Identities = 143/161 (89%), Gaps = 4/161 (2%)
Strand=Plus/Plus
Query 1 GACTACGACTaaaaaaaaCGATG---ACCACCACCTCCACAACTAGCTTCAACGCGTCTT 57
|||||| || || || ||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1379 GACTACTAC-AAGAACAACGATGACCACCACCACCTCCACAACTAGCTTCAATGCGTCGT 1437
Query 58 TGGAGTCGACGCCGTCGTCAAACTACGTTACTACCGTTGAGGATTCCATTTACCAGACGG 117
|||||| |||||||| ||||| ||||||||| || |||||||||| |||||||||||||
Sbjct 1438 CGGAGTCAACGCCGTCATCAAATTACGTTACTGCCCTTGAGGATTCTATTTACCAGACGG 1497
Query 118 CGGAGACTGGAGAAAATCAGTACTTTAATTACAACCGCCGG 158
|||||||||||||||||| |||||||||||||||| |||||
Sbjct 1498 CGGAGACTGGAGAAAATCCGTACTTTAATTACAACAGCCGG 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31094936993
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5