BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925110
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59710.1 | Symbols: | Protein of unknown function (DUF569) ... 1472 0.0
> AT1G59710.1 | Symbols: | Protein of unknown function (DUF569)
| chr1:21938367-21940184 FORWARD LENGTH=1670
Length=1670
Score = 1472 bits (797), Expect = 0.0
Identities = 900/949 (95%), Gaps = 9/949 (1%)
Strand=Plus/Plus
Query 8 CATCTCTTTCTCTAACAATGGAGATTTTTCAGAAGGCGAAAGCGGTTCGTTTGCGTAGCC 67
||||||||||||||||||||||||||||||| ||||| ||||| |||||| | || ||||
Sbjct 240 CATCTCTTTCTCTAACAATGGAGATTTTTCAAAAGGCCAAAGCCGTTCGTCTACGGAGCC 299
Query 68 ACCACGACAAGTACCTAGTCGCCGAAGAAGACGAAGAATCTGTAACTCAAGAACGTAACG 127
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 300 ATCACGACAAGTACCTAGTCGCCGATGAAGACGAAGAATCTGTAACTCAAGAACGTAACG 359
Query 128 GCTCAGCAGGTGCAGCCAAATGGACCGTTGAGATAATCCCAGGCTCAACAAATCTCATCC 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTCAGCAGGTGCAGCCAAATGGACCGTTGAGATAATCCCAGGCTCAACAAATCTCATCC 419
Query 188 GTCTCAAAAGCGCTTACGGAAAATACTTAACGGCGTCAAATAAACCGTTTCTTCTTGGAG 247
|||||||||||||||| || ||||||||||| ||||| || |||||||||||||||||||
Sbjct 420 GTCTCAAAAGCGCTTATGGCAAATACTTAACAGCGTCTAACAAACCGTTTCTTCTTGGAG 479
Query 248 CCACCGGaaaaaaaGTTCTACAGACTAATCCTAGTCGTCTTGACTCGTCTTTAGCTTGGG 307
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 480 CCACCGGAAAAAAAGTTCTACAGACTAAACCTAGTCGTCTTGACTCGTCTTTAGCTTGGG 539
Query 308 AACCGATTAGAGACTCTGCTTTGGTTAAGCTTAAGACTCGTTATGGTCACTTCCTTCGTG 367
||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 540 AACCGATTAGAGATTCTGCTTTGGTTAAGCTCAAGACTCGTTATGGTAACTTCCTTCGTG 599
Query 368 GTAACGGTGGTTTACCTCCTTGGAGAAACTCTGTTACTCATGATATTCCTCATAGATCGG 427
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GTAACGGTGGTTTACCTCCCTGGAGAAACTCTGTTACTCATGATATTCCTCATAGATCGG 659
Query 428 CGACTCAAGAATGGGTTCTTTGGCATGTTGATGTCGTTGAGATCCTCCCTGCAAACTGCA 487
| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 660 CCACTCAAGAATGGGTACTTTGGCATATAGATGTCGTTGAGATCCTCCCTGCAAAC-GCA 718
Query 488 A--TC--ATCACCAGCAGCAACAGCAGCTGCAGCTGCAGCTACCTCCGTCGCCGCTTCAT 543
| || ||||||| || | ||||| ||||||||||||| |||||||||||||||||||
Sbjct 719 AACTCCGATCACCACCA-C--CAGCACCTGCAGCTGCAGCAACCTCCGTCGCCGCTTCAT 775
Query 544 CATTCTGATTCTCTTGATTTCACACCTGGATCTCCTTCCAGATCTAACCGTTTCTTTAGA 603
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 776 CATTCTGATTCTCTTGATTTCACACCTGGATCTCCTTCCAGATCTGACCGTTTCTTTAGA 835
Query 604 CAAGAGTCAACGGATTCAGTGGCGGTTGGATCGCCGCCGAAATCGGAAGGGAGAGTGATA 663
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 836 CAAGAGTCAACGGATTCACTGGCGGTTGGATCGCCGCCGAAATCGGAAGGGAGAGTGATA 895
Query 664 TACTTCCATGTGGCGGATGATGATGGCGATGTTGAAGATGATTCTGTTGAGGTAAGTTCG 723
|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 896 TACTACCATGTGGCGGATGATGATGATGATGTTGAAGATGACTCTGTTGAGGTAAGTTCG 955
Query 724 TTTACTTTCAAAGGCAATGGTGTTGAAGAGCTGACTATGAGATTGAAAGAAGAGAGCAAT 783
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TTTACTTTCAAAGGAAATGGTGTTGAAGAGCTGACTATGAGATTGAAAGAAGAGAGCAAT 1015
Query 784 GTCGAAGATGTTATCGTTTGTACTCGTAGTCCGTTGAACGGGAAGCTTTTCCCGTTGCGT 843
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1016 GTCGAAGACGTTATCGTTTGTACTCGTAGTCCGTTGAACGGGAAGCTTTTCCCATTGCGT 1075
Query 844 CTTCAACTCCCACCTAACAATGCAGACATGACTGTCGTCTTAGTGCCAAAATCATCAAAA 903
|||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1076 CTTCAACTTCCACCTAACAATGCTGACATGACTGTTGTCTTAGTGCCAAAATCATCAAAA 1135
Query 904 ATAGCAGAAGAGTTTATCAAGTGAGATCTTTGTTT-GAAGCTGAGCTGT 951
||||||||| |||| |||||||||||||||| ||| |||||||||||||
Sbjct 1136 ATAGCAGAAAAGTTCATCAAGTGAGATCTTTCTTTTGAAGCTGAGCTGT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5