BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925113
Length=739
Score E
Sequences producing significant alignments: (Bits) Value
AT1G59690.1 | Symbols: | F-box associated ubiquitination effec... 292 2e-78
> AT1G59690.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr1:21935310-21935820 REVERSE LENGTH=432
Length=432
Score = 292 bits (158), Expect = 2e-78
Identities = 211/236 (89%), Gaps = 6/236 (3%)
Strand=Plus/Plus
Query 501 GATAGACACGAATGGACGCATAATTGCTTTGATTTGCCTCTTTCTGAAATGGACCCAATA 560
|||||||||||||||||||||||| || || |||| |||||||||||||||||| ||||
Sbjct 135 GATAGACACGAATGGACGCATAATCGCGTT--TTTGACTCTTTCTGAAATGGACCTAATA 192
Query 561 C-G-ACGCAAAGAGCCACGCTTTTGTGGTGTTAGTAATGCTGGTGAGCttttttttGCAC 618
| | | | ||| ||||| |||||| |||||||||| ||||||||||| || |||||||||
Sbjct 193 CGGAAAG-AAA-AGCCAAGCTTTTATGGTGTTAGTGATGCTGGTGAGATTGTTTTTGCAC 250
Query 619 CATGGATGTTGTCTGAATCGTTTAATATTCTATATTTCGATCCGAGGAGAAACAGTATTA 678
||| ||| |||| |||||||||| || | |||||||| ||||||||||||||||||||||
Sbjct 251 CATCGATATTGTTTGAATCGTTTTATCTACTATATTTTGATCCGAGGAGAAACAGTATTA 310
Query 679 GAGAAGTCTCGTTTGAAGGAATTGTGGGTGATGAATTTTGAAGCCGCTATGGATTT 734
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 311 GAGAAGTCTCGGTTGAAGGAATTGTGGGTGATGAATTTAGAAGCCGCTATGGATTT 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35867180958
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5