BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg925116

Length=1150
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G59675.1 | Symbols:  | F-box family protein | chr1:21931833-...   449    2e-125
  AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein ...   100    2e-20 


> AT1G59675.1 | Symbols:  | F-box family protein | chr1:21931833-21932403 
REVERSE LENGTH=495
Length=495

 Score =  449 bits (243),  Expect = 2e-125
 Identities = 293/318 (92%), Gaps = 0/318 (0%)
 Strand=Plus/Plus

Query  112  CCTCACGTGATAATGATACATCTCAATCAGAACATATTCCTCTGGATTTAACCATCCAGA  171
            ||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||  |||
Sbjct  5    CCTCACGTGATAATGATACATCTCAATCAGACCATGTTCCTTTGGATTTAACCATTGAGA  64

Query  172  TACTCTCAAGACTTCCTGCAAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTTTGGT  231
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct  65   TACTCTCAAGACTTCCTGCGAAATCGGTTGGGAGATTTCGCTCCGTCTCTAAGCTCTGGT  124

Query  232  CCACCATCACCACTAGTCAATATTTCATCAACTCCTTTGCGACTCGGTCCTTGGCATCGG  291
            |  ||| |||||| |||||| ||||||||||||||||||||||| |||||||||||||| 
Sbjct  125  CGGCCAACACCACCAGTCAAAATTTCATCAACTCCTTTGCGACTGGGTCCTTGGCATCGC  184

Query  292  GGCCTTCTGGACTGCTAACCGTCCAAAAAGGCGACATTCTGTTCGTTTTCTCGTCTCCCC  351
            ||||||||| |||||||||||||| |||||| |||||||||||||||||||||| |||| 
Sbjct  185  GGCCTTCTGTACTGCTAACCGTCCGAAAAGGTGACATTCTGTTCGTTTTCTCGTATCCCG  244

Query  352  TACACAAGAATAGTCCCGACGGTCAATTTTCTTGTGTGGGAAGTTATCAATTTACAAAAC  411
            || ||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||| |
Sbjct  245  TAGACAAGAATAGTTCCGATGGTCAATTTACTTGTGTGGGAAGTTATCAATTGACAAACC  304

Query  412  CTAATTTTGGTAACCTCT  429
            ||||||||||||||||||
Sbjct  305  CTAATTTTGGTAACCTCT  322


 Score =  152 bits (82),  Expect = 7e-36
 Identities = 105/116 (91%), Gaps = 2/116 (2%)
 Strand=Plus/Plus

Query  1016  GAGAAACAGTATTAGAGAAGTCGAAACTGTCGGTGATGAATTTAGACTTGT-TGAGGAGT  1074
             |||||||||||||||||||||||||||||| ||||||||| |||||||| | |||  |||
Sbjct  381   GAGAAACAGTATTAGAGAAGTCGAAACTGTGGGTGATGAAGTTAGACTT-TCTGACAAGT  439

Query  1075  ATATGTACACCAGGAATGTTTACCCTAATAACATCGAGAGTCTCGTGTCTTTGTGA  1130
             |||||||||||| |||||||||||| ||| ||||||| ||||| ||||||||||||
Sbjct  440   ATATGTACACCATGAATGTTTACCCAAATCACATCGAAAGTCTTGTGTCTTTGTGA  495


> AT1G56510.1 | Symbols: WRR4, ADR2 | Disease resistance protein 
(TIR-NBS-LRR class) | chr1:21167589-21173632 FORWARD LENGTH=3657
Length=3657

 Score =  100 bits (54),  Expect = 2e-20
 Identities = 67/73 (92%), Gaps = 1/73 (1%)
 Strand=Plus/Minus

Query  504   AAGAAATACATAGTACTACGTGTTTTTGTAGACTCCAAGATTTGCATTCTTACATTGGGA  563
             |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct  3656  AAGAAATACATAGTACTACGTGCTATTGGAGACTCCAAGATTTGCATTCTTACATTGGGA  3597

Query  564   GCTCAAGGACAAG  576
             | | ||| |||||
Sbjct  3596  GAT-AAGTACAAG  3585



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 56425412580


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5