BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg925117
Length=2326
Score E
Sequences producing significant alignments: (Bits) Value
AT4G19500.1 | Symbols: | nucleoside-triphosphatases;transmembr... 2213 0.0
> AT4G19500.1 | Symbols: | nucleoside-triphosphatases;transmembrane
receptors;nucleotide binding;ATP binding | chr4:10625659-10630395
FORWARD LENGTH=4313
Length=4313
Score = 2213 bits (1198), Expect = 0.0
Identities = 1880/2204 (85%), Gaps = 67/2204 (3%)
Strand=Plus/Plus
Query 32 AGAATGCGTATC-AGTCTTTTCATGCAATGACAGCCATGATGTGGACGAGACA-CAGTTC 89
||||||| || | || ||||| ||| | |||| || |||||| || || ||| | |||
Sbjct 1856 AGAATGCATA-CTTGTGTTTTCGTGCCACGACAACCTTGATGTAGATGAAACATC-TTTC 1913
Query 90 ATGGAAGCCATCTTAAAAGAGTTGCACGAGCGA-GGGATCA-CACCTTTGACGTATAATC 147
|| |||||||||| |||||| |||||| ||| | ||| ||| | |||||||| |||||||
Sbjct 1914 ATTGAAGCCATCTCAAAAGAATTGCACAAGC-AGGGGTTCATC-CCTTTGACATATAATC 1971
Query 148 TTTCAGGAAGAGAGAA-CTTGAACGTA-GAAATGTTAAACAGATCTAGTGTTGGTATTAT 205
||| || |||||||| || | | | | || |||||| || ||||||| || ||||| ||
Sbjct 1972 TTTTGGGCAGAGAGAACCTCG-ATG-AGGAGATGTTATACGGATCTAGAGTCGGTATCAT 2029
Query 206 GGTATTTTCAAATAGTTACGTTTGTTCTAAACAGTCCTTGGATCATCTTGTGGCAATCAT 265
| || |||||| |||||| |||| ||||| ||||||| ||||||| || || ||| | ||
Sbjct 2030 GATACTTTCAAGTAGTTATGTTTCTTCTAGACAGTCCCTGGATCACCTGGTTGCAGTTAT 2089
Query 266 GGAGCATTGGAAAGCGAA-AGACATTGTAATTATCCCTATATATTTTAAAGTGACAC-TT 323
||||||||||||| | || |||| |||||||||| ||||||||||||||||| | || ||
Sbjct 2090 GGAGCATTGGAAAAC-AACAGACCTTGTAATTATTCCTATATATTTTAAAGTAAGACTTT 2148
Query 324 CAACACATTTGTGGGTTGAAAGGCATGTCTGAAGCAGCATTTATGCAGCTTCAGAGGTCT 383
| | ||||||||||||||||||||| || ||||||||| ||| |||||||||| | ||||
Sbjct 2149 C-AGACATTTGTGGGTTGAAAGGCAGGTTTGAAGCAGCGTTTCTGCAGCTTCATATGTCT 2207
Query 384 CTCCAGGAAGACAGAGTTCAGAAATGGAAGATGGCTCTGGCTGAAATAGAATCCATTGAT 443
|||||||||||||||||||||||||||||| |||| || ||||||||| ||||| | |
Sbjct 2208 CTCCAGGAAGACAGAGTTCAGAAATGGAAGGCGGCTATGTCTGAAATAGTGTCCATCGGT 2267
Query 444 GGACATGAATGGACAAAAGGG-ACTGAGGTTATGCTTGCTGAGGAAGTTGTTAGAAACGC 502
|||||||||||||| ||||| | | || |||| ||||| ||||||||||| ||||| ||
Sbjct 2268 GGACATGAATGGAC-CAAGGGAAGTCAGTTTATTCTTGCCGAGGAAGTTGTAAGAAATGC 2326
Query 503 ATGCTTAAGGTTATATTC-GAAAAATAGCAAGAATCTGGTCAGAATCTTAGCATTGTTAA 561
|| ||||||| |||| || ||||| ||||||||||||| | |||||||||| |||||||
Sbjct 2327 ATCCTTAAGGCTATA-TCTGAAAAGTAGCAAGAATCTGCTTGGAATCTTAGCGTTGTTAA 2385
Query 562 ATCAGTCCCA-TCCTTCAGATGCT-GAAATTGTGGGAATTTGGGGTATGGCAGGAATAGG 619
|||| ||||| | || |||| | | |||||| ||||||| |||||||| |||||||||||
Sbjct 2386 ATCACTCCCAGT-CTACAGACG-TGGAAATTATGGGAATCTGGGGTATAGCAGGAATAGG 2443
Query 620 TAAGACATCCATTGCAAGAGAAATTTTTGGAATT-CTA-GCTCCACAATATGATATGTGT 677
||||||||| |||||||||||||| ||| ||||| | | |||||||| |||||| | |||
Sbjct 2444 TAAGACATCGATTGCAAGAGAAATATTT-GAATTAC-ATGCTCCACATTATGATTTCTGT 2501
Query 678 TACTTTCTGCAAGACTTTGATCTAACATGTCA-AACAAAAGGGCTGAGGCAAATGCGTGA 736
||||| |||||||||||| |||||| ||||| | |||| ||| ||||||| |||||||
Sbjct 2502 TACTTCCTGCAAGACTTTCATCTAATGTGTCAGATGAAAA-GGCCGAGGCAATTGCGTGA 2560
Query 737 TGATTTATTTTCT-AAAA-TATTTGGGGAAGAAAAACTAAGTATAGGCGCTTCTGATATA 794
|| || || ||| |||| | |||||||||| |||| | || |||| ||| |||| ||
Sbjct 2561 AGA-TT-TTATCTCAAAATTGTTTGGGGAAG-AAAA--AGGTCTAGGTGCTAGTGATGTA 2615
Query 795 AAAACGAGTTTCATGAGGGACTGGTTCCAGGAAAAAACGATTCTTCTTGTTCTCGATGAC 854
|| | ||||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 2616 AAGCCAAGTTTCATGAGGGACTGGTTCCATAAAAAAACGATTCTTCTCGTTCTTGATGAC 2675
Query 855 GTGAGTAATGCCAGAGATGCAGAAGCTGTAGTTGGAGGGTTTGGCTGGTTTTCTCATGGA 914
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 2676 GTGAGTAATGCCAGAGATGCAGAAGCTGTAATCGGAGGGTTTGGCTGGTTTTCTCATGGA 2735
Query 915 CACAGAATCATCATAACCTCTAGGAGAAAACAAGTTCTTGTACAATGCAGGGTTAAAGAG 974
|||||||||||| ||||||||||||| ||||||||||||||||| || | ||||||| ||
Sbjct 2736 CACAGAATCATCTTAACCTCTAGGAGTAAACAAGTTCTTGTACAGTGTAAGGTTAAAAAG 2795
Query 975 CCATACGAGATCCAAAAGTTATGCGAGTTTGAATC-TTCTCGTCTCTGCAAGCAATATTT 1033
||||||||||||||||| ||| |||| |||||||| || |||||||||||| ||||||||
Sbjct 2796 CCATACGAGATCCAAAAATTAAGCGATTTTGAATCGTT-TCGTCTCTGCAAACAATATTT 2854
Query 1034 GAATGGAGAAAATGTGGTCATCTCAGAGCTTATGAGCTGCAGTAGTGGTATTCCATTGGC 1093
| |||| |||||| ||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 2855 GGATGGCGAAAATCCGGTCATCTCTGAGCTTATCAGCTGCAGTAGTGGTATTCCATTGGC 2914
Query 1094 TCTCAATGTTCTGGGTTCCTCTGTATCAAAGCAGCATAGAA-GCAATATGAAGGAACATC 1152
|||||| || | | ||||||||||||||||||| ||| || | |||||||| || ||||
Sbjct 2915 TCTCAAACTTTTAGTTTCCTCTGTATCAAAGCAGTATATAACG-AATATGAAAGACCATC 2973
Query 1153 TCCAAAGCTTGCGGAGAA-ATCCTCCAACTCAGATTCAAGACGAATTCCAGAAAAGCTTT 1211
||||||||||| ||| || ||||||| |||||||||||||| | ||| | || ||| |||
Sbjct 2974 TCCAAAGCTTGAGGA-AAGATCCTCCTACTCAGATTCAAGAAGCATTTCGGAGAAGTTTT 3032
Query 1212 GGTGGACTAGACGAAAACGA-AAAGAACATATTTTTGGATCTTGCATGTTTTTTCACAGG 1270
| ||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| ||
Sbjct 3033 GATGGACTAGATGAAAACGAGAAA-AACATATTTTTGGATCTTGCATGTTTTTTCAG-GG 3090
Query 1271 GG-AGAACAAAGATCATGTGGTGCAAATACTTGATGCTTGTGGGTTTTTTACATATTTGG 1329
|| ||| ||||||| ||| ||||| | |||||||||||||||| |||||||||||| |||
Sbjct 3091 GGCAGAGCAAAGATTATGCGGTGCTATTACTTGATGCTTGTGGTTTTTTTACATATATGG 3150
Query 1330 GAATCTGTGATCTCATTGACGAGTCTCTCATTAGCGTTGTAGACGATAAAATCGAGATGC 1389
|||||||||| |||||||||||||| ||||||||| |||||||| | || || |||||||
Sbjct 3151 GAATCTGTGAGCTCATTGACGAGTCACTCATTAGCCTTGTAGACAACAAGATAGAGATGC 3210
Query 1390 CTGTTCCTTTTCAAGATATTGGTCGATTTATAGTTCATGAAGAAGGCGAGGATCCATGCG 1449
|| ||||||||||||| || || ||| |||| ||||||||||||| ||||||||||| |
Sbjct 3211 CTATTCCTTTTCAAGACATGGGCCGAATTATTGTTCATGAAGAAGATGAGGATCCATGTG 3270
Query 1450 AACGTAGCAGATTGTGGGACTCTAAAGACATCGCTAATGTATTGACACGCAATTCCGGAA 1509
|||||||||||||||||||||| || ||||||| | |||| |||||| |||||| ||||
Sbjct 3271 AACGTAGCAGATTGTGGGACTCGAAGGACATCGTTGATGTTTTGACAAACAATTCAGGAA 3330
Query 1510 CTGAAGCGATTGAAGGCATTTTCCTGGATGCTTCTGACTTGAACTATGAGCTTAGTCCTA 1569
| ||||| ||||| ||||| ||||||||||| |||||||||| || |||||||||||||
Sbjct 3331 CAGAAGCAATTGAGGGCATCTTCCTGGATGCGTCTGACTTGACCTGCGAGCTTAGTCCTA 3390
Query 1570 CTATGTTTAGTAAGATGTATAGA-CTAAGATTGCTGAAGCTCTATTTTTCCACCCCTGGG 1628
|| ||||| |||||||||||| | || |||||||||||| |||||| ||| ||| |||||
Sbjct 3391 CTGTGTTTGGTAAGATGTATA-ATCTTAGATTGCTGAAGTTCTATTGTTCAACCTCTGGG 3449
Query 1629 AACCAGTGCAAGCTAAGTCTATCTCAAGGCCTCTACACTTTGCCCGATGAGCTCAGGT-T 1687
|||||||||||||| | |||| |||| ||||| |||||||||| |||||||| || | |
Sbjct 3450 AACCAGTGCAAGCTTACTCTACCTCACGGCCTAGACACTTTGCCTGATGAGCTAAG-TCT 3508
Query 1688 ACTTCATTGGGAGAATTATCCTCTGGAATACTTGCCTCAGAAATTTAATCCTGAAAATCT 1747
|||||| ||||||||||| ||||||| ||||||||||||||||||||||||| || ||
Sbjct 3509 ACTTCACTGGGAGAATTACCCTCTGGTTTACTTGCCTCAGAAATTTAATCCTGTGAACCT 3568
Query 1748 TGTAGAGATAAACATGCCCTATAGCAACATGGAGAAGCTATGGGAAGGGAAGAAAAATCT 1807
||||||| |||||||||| |||||||||||||||||| | |||||||| |||||||||||
Sbjct 3569 TGTAGAGTTAAACATGCCTTATAGCAACATGGAGAAGTTGTGGGAAGGAAAGAAAAATCT 3628
Query 1808 CGAGAAGCTAAAGAGA-ATTAAACTGAGTCACTCCAGA-AACTTAACTGACGTCATGGTG 1865
|||||||||||||| | || |||||||||||||||||| || |||||||| || || ||
Sbjct 3629 CGAGAAGCTAAAGA-ACATCAAACTGAGTCACTCCAGAGAA-TTAACTGATATCCTGATG 3686
Query 1866 TTATCAGAAGCCTTGAACCTTGAACATATTGATCTCGAAGGATGTATTAGTCTGGTTGAC 1925
|||||||||||| ||||||| ||||| |||||||||||||| |||| |||||| ||||
Sbjct 3687 TTATCAGAAGCCCTGAACCTGGAACACATTGATCTCGAAGGGTGTACGAGTCTGATTGAT 3746
Query 1926 GTTAGCACATCTATTCCTAGTTGTGGGAAGCTTGTTTCATTAAATTTGAAAGACTGTTCT 1985
||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||||||
Sbjct 3747 GTTAGCATGTCTATTCCTTGTTGTGGGAAGCTTGTTTCCTTGAATATGAAAGACTGTTCT 3806
Query 1986 CAGTT-GCAAAGTCTGCCTGCCATGTTTGGGTTAATATCTCTCAAGCTTCTTCGTATGTC 2044
| ||| || |||||||||| | ||| ||| |||| | |||||||||||||| | ||||
Sbjct 3807 C-GTTTGCGAAGTCTGCCTTCTATGGTTGATTTAACAACTCTCAAGCTTCTTAATTTGTC 3865
Query 2045 TGGCTGCTCAGAGTTCGAGGAGATTCAGGATTTTGCACCAAACTTGAAAGAGTTATATCT 2104
|||||||||||| || ||||| ||||||||||||||||||||| || ||||| |||||||
Sbjct 3866 TGGCTGCTCAGAATTTGAGGATATTCAGGATTTTGCACCAAACCTGGAAGAGATATATCT 3925
Query 2105 AGCTGGGAC-TGCCATAA-AGGAACTTCCATTGTCAATCGAG-AATCTCACTGAACTTAT 2161
||||||||| | |||| | || | ||||| ||||||||| || ||||||||||||||| |
Sbjct 3926 AGCTGGGACAT-CCATTAGAG-AGCTTCCGTTGTCAATC-AGGAATCTCACTGAACTTGT 3982
Query 2162 TACGCTTGATCTTGAGAACTGC-ACAAGGCTTCAG-AAACTGCC 2203
|||||| ||||| ||||||||| | |||||||||| ||| ||||
Sbjct 3983 TACGCTAGATCTGGAGAACTGCGA-AAGGCTTCAGGAAA-TGCC 4024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 115461253500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5